Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00208 GGCTGTGGAGGAGGCGCCACGTCCACAACCTGCGCCATCTTCTGATCTTCTAATCTTCATTTTTCGTTATTTTAATGAACAAGCTCTGAATTAAACAACTTTCAAAGGGGCCAAGAAGAAATCTATACTCCCATTAACAATGGAGAAACTGGCAATTCCTTGCCAAACGAATCCTCCAATTTCTGTTCCTGCTTCAATTATCAAACCCAAACCCCTTAAATTCTCCTCAAAACCAACTAAATCTTCTATATTTTTCACCCAGAAACTTACTACAAGGTTCAATGACGACCATTTGAGTTACCTTTGCAGTAATGGGCTCCTCCGGGAAGCCATAACAGCCATCGATTCAATGTCTAAACGTGGGTCTAAGTTAAGCACTAACTCTTATATCAACTTGCTTCAAACTTGCATAGATACGGATTCTGTTGAACTGGGTCGTGAGCTTCATGTTCGTATGAGTTTAGTCGATCAGGTAAACCCATTTGTTGAGACAAAGCTAGTTAGCATGTATGCGAAATGCGGGTTTCTAAAAGATGCACGTAAGGTGTTTGATGGAATGCAGGAGAGGAATTTGTACACTTGGTCGGCAATGATAGGCGCATATTCAAGAGAGCAGAGATGGAAAGAAGTAGTTGAACTTTTCTTTTTGATGATGGGAGATGGGGTATTGCCTGATGCATTTCTTTTCCCAAAAATATTGCAGGCTTGTGGGAATTGCGAGGATCTTGAAACTGTGAAGTTAATACATTCTGTGGTTATTCGATGTGGGTTAAGTTGTTATATGCGTGTCAACAATTCTATTTTGACGGCATTTGTCAAATGTGGGAAATTGAGTCTAGCTAGGAAGTTCTTTGAGAACATGGACGAAAGAGATGAGGTCTCTTGCAATGCTATGATAGCTGGTTATTGCCAGAAGGGAAATGGTAATGAAGCTAGGAGATTGCTTGATGCGATGAGCGATCAAGGATTCAAACCGGGTCTGATTACTTATAACATAATGATTGCTAGTTATAGCCAGTTGGGGAATTGTAGTCTTGTTCTAGAATTGAAGAAGAAGATGGAGAGTATGGGGATAGCGCCTGACGTCTATACTTGGACCTCAATGATATCGGGTTTTGCTCAAAGCAGCAGGATTAGTCAGGCATTGGATTTCTTCAAGGAGATGATTCTAGCTGGGGTTGAACCAAATGCTATAACTATTGCAAGTGTGACCTCGGCCTGTGCTTCCTTAAAATCACTGCAAAAAGGGCTGGAGATACATTGTTTTGCAATTAAAATGGGAATTGCGCACGAAGTATTGGTTGGGAATTCACTTATTGATATGTATTCTAAATGTGGAAAATTGGAAGCTGCTCGCCATGTCTTTGACACGATTTTAGAAAAAGACATTTATACGTGGAACTCGATGATTGGAGGATATTGTCAGGCTGGATATTGTGGTAAAGCATATGAACTTTTTATGAGATTAAGGGAATCAAATGTAATGCCTAATGTTGTTACATGGAATGTGATGATATCAGGATGTATACAGAATGGAGATGAGGATCAAGCTATGAACCTCTTTCAAATCATGGAAAAAGATGGGGAGGTTAAGCGGAATACAGCATCCTGGAATTCTCTTATTGCTGGGTACCACCAGCTTGGTGAAAAGAACAAAGCTCTAGCAATATTTCGACAAATGCAGTCTCTTAATTTTAATCCTAATTCAGTGACTATCTTGAGCATTTTACCAACTTGTGGAAATGTAATGGCAGAGAAAAAAATAAAGGAAATCCATGGTTGTGTGTTGCGCAGAAACCTGGAGTCTGAGCTTCCTGTTGCAAACTCACTTATAGACACTTATGCCAAATCAGGGAACATTCAATATTCAAGAACCATCTTTGATGGCATGCCATCCAAAGATATTATCACCTGGAATTCAATTATTGCAGGATATGTTTTACATGGTTGTTCAGATGCTGCATTTCATTTGTTTGGTCAGATGAAAAAGTTTGGAATTAGGCCGAACCGAGGTACTCTGGCTAGTATTATTCATGCCTATGGCATTGCTGGAATGGTAGACAAGGGAAGACATGTTTTTTCTAGCATCACTGAAGAACATCAAATTCTACCAACTTTAGATCATTATTTTGCTATGGTAGATCTGTATGGACGTTCTGGGAGGCTTACAGATGCAATAGAGTTCATCGAAGATATGCCTATAGAACCCGATGTCTCTATCTGGACAAGCTTACTTACTGCCTGTAGGTTTCACGGCAACTTACACTTGGCAGTACAAGCAGTCGAGCGCCTACACGAATTGGAGCCTGATAATCATGTGGTTTACCGTTTATTAATACAAGCATATGCTTTATATGGGAAATTTGAACAAACTCTAAAAGGGAGAAAGCTTGGAAAAGAGAGTGCGATGAAGAAATGTACAGCACAGTGCTGGGTTGAAGTCAGGAACAAAGTCCATTTATTTGTCACTGGCGAGCAGTCTAAGCTTGACGTTCTAAATACTTGGATAAAGAGCATTGAAGGGAAAGTAAAGAAATTTAATAATCACCATCATCTTTCTATTGAAGAAGAACAGAAAGAAGAAAAAATTGGTGGGTTCCACTGTGAAAAATTTGCTTTTGCTTTTGGCCTTATTGGCTCATCTCATACACCCAAAAGTATAAAGATTGTGAAAAATTTAAGAATATGTGGGGACTGTCATCAGATGGCCAAATATATCTCAGCGGCTCATGAATGTGAAATATATTTAAGTGACTCAAACTGCTTGCACCATTTCAAAAATGGTCACTGTTCTTGTGGGGATTATTGGTGCTATTCATTTGCTTTGCATTATTTGATTGCATTCAACTTTTTTTTTCTTCCACAGCCAGTTAGAAGTTTGTTTTTTCCCACACAGAGTTTTGATGATTCTCGAAAAATCAAGCCAATCATGGCTGGTCCTTTTGGAGGACCAGGTGGAAGTAACTGGGATGATGGAGTTTATTCAACTATCAGGCAGTTGGTAATTTGCCATGGAGCTGGTATCGACTCCATTAAGATTCAATATGATGTGAAGGGAAGTTCAATTTGGTCAGATAGACATGGAGGAAATGGTGGCACTAAAACAGACACGGTGAAGCTTGATTTTCCGGATGAGTACTTGACTATGATCCGTGGACACTATGGTAGCTTTGTGTCATTTGACAAAGTTTTTGTTCGATCCCTGACTTTTATGAGCAACAAAAAGAAGTACGGACCTTACGGGGTCGAACAAGGAACAATTTTCTCGTTTCCCATGACTGAGGGCAAGATTGTAGGGTTCCATGGCAGGAGTGGATTGTACCTGGATGCCATTGGAGTTTATCTAAAGCCTATGGCTACACAATCGCCATCTAAAGCAATGATTCAGTCACAGAATTATGTTGCTAGTAAGACTGACAGTGAAGGCTATTCAATTATACAAGGCAGTGTTGGCCAAAATTATGATATTGTTCTTGCTGTTAGGCAGAAGGATGAATTCAAAAAGCCTCTTCCAACTACTATCTCAAAACAAGTATCTAGTTCCTCAAGCTCAGAATCAAGCGATGATGAATCCACAGTCAAGAGGCCTGTTAAGAAGGGACCGTCTAGAGTCGAAAATGTGGTACCATGTGGACCCTGGGGTGGCTCAGGTGGAACTCCATTTGATGATGGATATTATACTGGTATTAGACAAATTAATGTGTCGCGTAATGTTGGAATTGTATATATAAGAGTTCTGTATGCTTGTGATGAGGAATCTATATGGGGAGGACGAGCAGGTGGAACTGGAGGATTCAAAAATGACAAGGTTATCTTGGATTATCCATATGAAATCTTGACTCATGTAACTGGACACTATGGGCCTGTCATGTACATGGGACCTAATGTTATCAAGTCACTCACATTCCATACTACAAAAACGAAGTACGGACCATTTGGAGAGGCACAAGGAACCCCCTTTAGTACCAACGTCAAGGAGGGGAAGATCGTTGGATTTCATGGGAGGAAAGGTTTGTTCCTAGATGCTCTTGGTGTGCACTTAGTTGAAGGAAAGGTGACCCCGGTGTCTCGTCCTCCCTCCAGCGGTATTGTTCCTGCTGCACCACCGGTTCTTGAAAATGAGAATGCCCCTTGGACTGTGAAACTGGCACCTTCAAAAGGAGGAGCACTTGAAGAGATTGCTCGTGGTGTAGTAAAACAACCAGCACCCTGTGGACCTGGACCATGGGGCGGAGATGGCGGGAAACCATGGGATGATGGAGTATTTTCGGGCATTAAACAGATATACTTGACACGGTCTCTTGAAGCTTTTTGTTCGATTCAAATTGAATATGATCGAAACAAACAATCAGTTTGGTCAGTTAAGCATGGAGGAAACAGTGGAACAACCATACATCGGGTAAAATTGGATTATCCACATGAAGTGTTAACTTGTATATCAGGATATTACGGTTACATCGGTAAAGATGAGAGACAACAAGCTATAAAGTCGCTTACTTTTCACACAAGCAGGGGGAAGTTCGGTCCATTTGGGGAGGAGGTAGGGTCGTTTTTCACGTCCACGACGACGGAGGGCAAAGTGGTTGGCTTCCATGGGAGGAGCAGCTTGTATTTGGACGCCATTGGAGTTCACATGCAACACTGGCTAGGAAGCCAAAGGGCTTCCAAGTCTTTGTTCAAACTGTTCTGATATGAAAATGAAAGAACTAATAATGCTGAGATGGAGCAATATGATTCCGTTAGTAATCAATTAGGGAAAAGTGAGATTCTATCATCTTTTCCTTGTCTTCCATTTGCATGGAAAAGAATGTTTGGCCTAATCAATAACGCTTATCAATATTATTCCTGCATATGATATTTCATATTCGATACTACTAGTGAAATGTAATAAAAATTGAGCGTGAATACAGTATGTAGAGTGATTTTTTAAGTGTTTTTTTAATCAATGAAGTTTTTTTTTTTTTTTTT 4968 40.32 MEKLAIPCQTNPPISVPASIIKPKPLKFSSKPTKSSIFFTQKLTTRFNDDHLSYLCSNGLLREAITAIDSMSKRGSKLSTNSYINLLQTCIDTDSVELGRELHVRMSLVDQVNPFVETKLVSMYAKCGFLKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLPDAFLFPKILQACGNCEDLETVKLIHSVVIRCGLSCYMRVNNSILTAFVKCGKLSLARKFFENMDERDEVSCNAMIAGYCQKGNGNEARRLLDAMSDQGFKPGLITYNIMIASYSQLGNCSLVLELKKKMESMGIAPDVYTWTSMISGFAQSSRISQALDFFKEMILAGVEPNAITIASVTSACASLKSLQKGLEIHCFAIKMGIAHEVLVGNSLIDMYSKCGKLEAARHVFDTILEKDIYTWNSMIGGYCQAGYCGKAYELFMRLRESNVMPNVVTWNVMISGCIQNGDEDQAMNLFQIMEKDGEVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFNPNSVTILSILPTCGNVMAEKKIKEIHGCVLRRNLESELPVANSLIDTYAKSGNIQYSRTIFDGMPSKDIITWNSIIAGYVLHGCSDAAFHLFGQMKKFGIRPNRGTLASIIHAYGIAGMVDKGRHVFSSITEEHQILPTLDHYFAMVDLYGRSGRLTDAIEFIEDMPIEPDVSIWTSLLTACRFHGNLHLAVQAVERLHELEPDNHVVYRLLIQAYALYGKFEQTLKGRKLGKESAMKKCTAQCWVEVRNKVHLFVTGEQSKLDVLNTWIKSIEGKVKKFNNHHHLSIEEEQKEEKIGGFHCEKFAFAFGLIGSSHTPKSIKIVKNLRICGDCHQMAKYISAAHECEIYLSDSNCLHHFKNGHCSCGDYWCYSFALHYLIAFNFFFLPQPVRSLFFPTQSFDDSRKIKPIMAGPFGGPGGSNWDDGVYSTIRQLVICHGAGIDSIKIQYDVKGSSIWSDRHGGNGGTKTDTVKLDFPDEYLTMIRGHYGSFVSFDKVFVRSLTFMSNKKKYGPYGVEQGTIFSFPMTEGKIVGFHGRSGLYLDAIGVYLKPMATQSPSKAMIQSQNYVASKTDSEGYSIIQGSVGQNYDIVLAVRQKDEFKKPLPTTISKQVSSSSSSESSDDESTVKRPVKKGPSRVENVVPCGPWGGSGGTPFDDGYYTGIRQINVSRNVGIVYIRVLYACDEESIWGGRAGGTGGFKNDKVILDYPYEILTHVTGHYGPVMYMGPNVIKSLTFHTTKTKYGPFGEAQGTPFSTNVKEGKIVGFHGRKGLFLDALGVHLVEGKVTPVSRPPSSGIVPAAPPVLENENAPWTVKLAPSKGGALEEIARGVVKQPAPCGPGPWGGDGGKPWDDGVFSGIKQIYLTRSLEAFCSIQIEYDRNKQSVWSVKHGGNSGTTIHRVKLDYPHEVLTCISGYYGYIGKDERQQAIKSLTFHTSRGKFGPFGEEVGSFFTSTTTEGKVVGFHGRSSLYLDAIGVHMQHWLGSQRASKSLFKLF 1516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5058130 5064943 - XM_039028974.1 Bhi04g00208 31817

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00208 1516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 521 IPR002885 -
Bhi04g00208 1516 Pfam PPR repeat 146 176 IPR002885 -
Bhi04g00208 1516 Pfam PPR repeat 120 144 IPR002885 -
Bhi04g00208 1516 Pfam PPR repeat 219 244 IPR002885 -
Bhi04g00208 1516 Pfam PPR repeat 665 686 IPR002885 -
Bhi04g00208 1516 Gene3D - 918 1069 IPR036404 -
Bhi04g00208 1516 Gene3D - 1351 1500 IPR036404 -
Bhi04g00208 1516 Gene3D - 1151 1302 IPR036404 -
Bhi04g00208 1516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Bhi04g00208 1516 Gene3D Tetratricopeptide repeat domain 326 480 IPR011990 GO:0005515
Bhi04g00208 1516 Gene3D Tetratricopeptide repeat domain 49 210 IPR011990 GO:0005515
Bhi04g00208 1516 Gene3D Tetratricopeptide repeat domain 560 816 IPR011990 GO:0005515
Bhi04g00208 1516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 451 485 IPR002885 -
Bhi04g00208 1516 CDD Jacalin 1172 1301 IPR033734 GO:0030246
Bhi04g00208 1516 TIGRFAM PPR: pentatricopeptide repeat domain 453 483 IPR002885 -
Bhi04g00208 1516 TIGRFAM PPR: pentatricopeptide repeat domain 282 316 IPR002885 -
Bhi04g00208 1516 TIGRFAM PPR: pentatricopeptide repeat domain 490 522 IPR002885 -
Bhi04g00208 1516 TIGRFAM PPR: pentatricopeptide repeat domain 418 452 IPR002885 -
Bhi04g00208 1516 TIGRFAM PPR: pentatricopeptide repeat domain 590 623 IPR002885 -
Bhi04g00208 1516 TIGRFAM PPR: pentatricopeptide repeat domain 146 180 IPR002885 -
Bhi04g00208 1516 TIGRFAM PPR: pentatricopeptide repeat domain 317 351 IPR002885 -
Bhi04g00208 1516 TIGRFAM PPR: pentatricopeptide repeat domain 247 279 IPR002885 -
Bhi04g00208 1516 MobiDBLite consensus disorder prediction 1126 1141 - -
Bhi04g00208 1516 Pfam PPR repeat family 415 462 IPR002885 -
Bhi04g00208 1516 Pfam PPR repeat family 587 634 IPR002885 -
Bhi04g00208 1516 Pfam PPR repeat family 245 290 IPR002885 -
Bhi04g00208 1516 Pfam PPR repeat family 487 530 IPR002885 -
Bhi04g00208 1516 Pfam PPR repeat family 314 362 IPR002885 -
Bhi04g00208 1516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Bhi04g00208 1516 SUPERFAMILY Mannose-binding lectins 1357 1499 IPR036404 -
Bhi04g00208 1516 SMART Jacalin_2 1172 1303 IPR001229 -
Bhi04g00208 1516 SMART Jacalin_2 1368 1501 IPR001229 -
Bhi04g00208 1516 SMART Jacalin_2 940 1071 IPR001229 -
Bhi04g00208 1516 SUPERFAMILY Mannose-binding lectins 1162 1301 IPR036404 -
Bhi04g00208 1516 Pfam Jacalin-like lectin domain 940 1071 IPR001229 -
Bhi04g00208 1516 Pfam Jacalin-like lectin domain 1172 1301 IPR001229 -
Bhi04g00208 1516 Pfam Jacalin-like lectin domain 1368 1500 IPR001229 -
Bhi04g00208 1516 ProSiteProfiles Jacalin-type lectin domain profile. 1357 1501 IPR001229 -
Bhi04g00208 1516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
Bhi04g00208 1516 PANTHER BNAA06G13890D PROTEIN 49 381 - -
Bhi04g00208 1516 PANTHER BNAA06G13890D PROTEIN 383 451 - -
Bhi04g00208 1516 PANTHER BNAA06G13890D PROTEIN 522 877 - -
Bhi04g00208 1516 ProSiteProfiles Jacalin-type lectin domain profile. 929 1071 IPR001229 -
Bhi04g00208 1516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
Bhi04g00208 1516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Bhi04g00208 1516 CDD Jacalin 1371 1500 IPR033734 GO:0030246
Bhi04g00208 1516 MobiDBLite consensus disorder prediction 1125 1163 - -
Bhi04g00208 1516 ProSiteProfiles Jacalin-type lectin domain profile. 1161 1303 IPR001229 -
Bhi04g00208 1516 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 522 877 - -
Bhi04g00208 1516 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 383 451 - -
Bhi04g00208 1516 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 49 381 - -
Bhi04g00208 1516 Gene3D Tetratricopeptide repeat domain 211 307 IPR011990 GO:0005515
Bhi04g00208 1516 SUPERFAMILY Mannose-binding lectins 929 1071 IPR036404 -
Bhi04g00208 1516 Pfam DYW family of nucleic acid deaminases 808 890 IPR032867 GO:0008270
Bhi04g00208 1516 SUPERFAMILY TPR-like 392 747 IPR011990 GO:0005515
Bhi04g00208 1516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Bhi04g00208 1516 CDD Jacalin 940 1070 IPR033734 GO:0030246
Bhi04g00208 1516 Gene3D Tetratricopeptide repeat domain 481 547 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00208 - - - csv:101214358 2754.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00208 Bhi-Chr4:5058130 Bhi02g00048 Bhi-Chr2:1000446 3.55E-10 dispersed
Bhi04g00716 Bhi-Chr4:17236764 Bhi04g00208 Bhi-Chr4:5058130 8.37E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1013 . . . . . . . . Cmo05g00276 . . . . . . . . Bhi04g00208 . . . . . . . . . . . . . . . . Cone20ag0115 . . . . . . . . . . . . . . . . Cma05g00271 Car05g00224 . Cpe11g00224 . . . . . . . . . . . . . . . . Csa02g02091 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002824 2 1 2 2 1 2 2 2 2 1 1 2 3 1 1 3 2 2 3 2 2 2 2 1 0 1 1 2 3 2 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00208 Bhi_Chr04 FPKM 5.393898 5.352483 6.21735 5.20139 7.908188 9.715842 8.476369 12.371299 11.14572 11.133308