Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00209 TCATCTCTCCGTATCGTTACGGTTTTTGATACGGAGAATATTTCTTTTGCAGAAAGCGATTTGCGTTTAATCCAATGGGTGAAGAAGGCCAAGTTATTGCATGCCATAAGCAGCCTGAATGGGAGGCTCTCTTAGCCAAAGGCAAGGAATCTGGAAAACTGATTGTCGTGGATTTTACTGCTTCCTGGTGCGGGCCATGCCGTACAATTGCTCCATATTTCTCCGAATTGGCTAAGAATCATCCCGGTGTCATTTTCCTGAAAGTGGACGTCGATGAGTTGAATACTGTTGCTAGCGAGTGGAAGATTAATGCAATGCCGACATTTGTTTTTGTGAAAGGAGGGGAAACAGTTCACAAGATTGTTGGTGCTGATAAAGGGGCGCTGTTGAAGAAATTAGAAGAGCTTAAAACTCCAACAGCTGCTGCTACTTCTACTGCTTAGACAAGTCAACTTGGAGGAATGTGTCCTCCTTATTATCAGTATGGTTTAATGTTGATTCTGGTTTCGGAGTTTGTTCTTCTTGTGAATTTCATAACATTGTGTTTAAGATGTTTACTGTTCTTTGTTTCCCCTTAAAGAAGTTTGGATAATATGTGCAAACTTTCAAATATATGATTCTCTGGTGCTTGTTATAAATAGAAGCTGCAGGTTTCATCGTGGAATAAATGGGGCAGGAATTTGTTGAACTCTGAAGTCGCCTGAATTTGCACATTTTATCAGCAGTGTTCCGTAAGAACTTGATAGTACTCTACATACTGATTTTTATGCAGTTTGTTTATTGTTTGCAGTACAGTAACTTTTGAGTAGGTATCTGAAACTTAAAAAAAGATGGGTGTTTCTAACCTTCGATTTTGTGTTTGATAGGGCTTGAAATACTCAATTTTGTGCCATTAGTTTATAATGTTAAAAGTTTTTTTTTAACTTTATGTCTAGTAAGCATGTGAGGGGCTTTTGGTTTGTAGAGTTAATATGTTGGAATTTGTAAGTTTATGTTTGGAATATAGAATTGTAAGATAAAGTTCTTTAATAAATGTGAAAAGTAAAAGTAAAGAAAGAAGAGAAAGTGGAGTCATTTGATAAATGTGAATAGTGAAAAAGAAGAGAAATGAAGTTACTAAGCTCCTGAATGTCTTAGAATATTATTGTAGATTAATTGATCTATTAGATACAGAATTGATTGAAAGTTTAGTGACTTAGAAGTTGTTTGTGGGGCGTTGGTTGGTTATTATAATTTATTGTAGTTTGGGTTATAATAGTTATGTTTCCGATGAAGACTATTTTAGTCGAAGTTACAATCATGTATGTTTTTTTTGTGTGTTTTAGTCTGGGTTATAATCATTTATGTTTTTTTCGTGTTT 1360 35.07 MGEEGQVIACHKQPEWEALLAKGKESGKLIVVDFTASWCGPCRTIAPYFSELAKNHPGVIFLKVDVDELNTVASEWKINAMPTFVFVKGGETVHKIVGADKGALLKKLEELKTPTAAATSTA 122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5067304 5069168 - XM_039030283.1 Bhi04g00209 31818

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00209 122 ProSiteProfiles Thioredoxin domain profile. 1 113 IPR013766 -
Bhi04g00209 122 SUPERFAMILY Thioredoxin-like 6 112 IPR036249 -
Bhi04g00209 122 Pfam Thioredoxin 10 108 IPR013766 -
Bhi04g00209 122 CDD TRX_family 15 109 - -
Bhi04g00209 122 PRINTS Thioredoxin family signature 30 38 - -
Bhi04g00209 122 PRINTS Thioredoxin family signature 38 47 - -
Bhi04g00209 122 PRINTS Thioredoxin family signature 77 88 - -
Bhi04g00209 122 Gene3D Glutaredoxin 1 117 - -
Bhi04g00209 122 PANTHER THIOREDOXIN 1 109 - -
Bhi04g00209 122 ProSitePatterns Thioredoxin family active site. 31 49 IPR017937 -
Bhi04g00209 122 PANTHER THIOREDOXIN 1 109 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00209 K03671 trxA; thioredoxin 1 - csv:101212030 209.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00209 Bhi-Chr4:5067304 Bhi07g00654 Bhi-Chr7:25811134 2.41E-36 dispersed
Bhi04g00349 Bhi-Chr4:8380313 Bhi04g00209 Bhi-Chr4:5067304 5.83E-11 dispersed
Bhi04g00350 Bhi-Chr4:8380317 Bhi04g00209 Bhi-Chr4:5067304 5.83E-11 dispersed
Bhi11g03026 Bhi-Chr11:82306764 Bhi04g00209 Bhi-Chr4:5067304 3.75E-30 dispersed
Bhi04g00209 Bhi-Chr4:5067304 Bhi04g00210 Bhi-Chr4:5109000 4.94E-43 tandem
Bhi01g00473 Bhi-Chr1:8504421 Bhi04g00209 Bhi-Chr4:5067304 1.18E-11 transposed
Bhi03g00235 Bhi-Chr3:5227954 Bhi04g00209 Bhi-Chr4:5067304 3.47E-19 transposed
Bhi03g00443 Bhi-Chr3:8393953 Bhi04g00209 Bhi-Chr4:5067304 1.87E-12 transposed
Bhi09g01947 Bhi-Chr9:54325689 Bhi04g00209 Bhi-Chr4:5067304 5.40E-26 transposed
Bhi03g00902 Bhi-Chr3:17006390 Bhi04g00209 Bhi-Chr4:5067304 1.05E-37 wgd
Bhi04g00209 Bhi-Chr4:5067304 Bhi09g02194 Bhi-Chr9:61585008 9.07E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1015 . . . . . . . . Cmo05g00277 Cmo12g00390 . . . Car12g00416 . . Cpe07g00394 Bhi04g00209 . . . Hepe10g0604 . . Cla08g01456 Cam08g1941 Cec08g1515 Cco08g1654 Clacu08g1631 . Cre08g1417 . . . . . . Chy04g00470 Cme03g01919 . . . . . . . . . . . Cma12g00439 . Car05g00225 . Cpe11g00225 . . . . . . . . . . . . . . . Lsi08g01362 Csa02g02092 Chy03g01423 Cme04g00516
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002761 0 2 0 0 0 2 4 2 2 2 2 2 3 2 2 3 2 0 3 2 3 1 3 2 2 3 2 2 3 0 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00209 Bhi_Chr04 FPKM 25.704344 28.262835 12.046056 11.408896 19.30073 16.915829 18.443659 12.467851 11.895514 12.648074