Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00217 ATCTCATAGCTCCGTTCCCTCTCTTACAGTCCCAATGGATCGCCTCGCTGTATTCGCTCTCTTCTTTACTATTCTACTATCCGCGACGGTAACCTACGGTGTATCGTCCGATCAAATCAACGGCGCCCAAAGCGACGACGAAGATCTTCTGATTCGTCAAGTCGTCTCTGGTGCCGATGATCGTCGCTTAACCGCCGAACAACACTTCCAGAACTTCAAACTCAAGTTTGGAAAGACATACGCCACTGATGAGGAGCACGATTACAGGTTCCGTATCTTTAAGGCTAACCTCCGCAAAGCCAAGCGCCACCAGAAGCTCGATCCCGACGCTGTCCATGGCGTCACTCGGTTTTCCGATCTCACCGAGTCTGAGTTCCGTACAAATTTCGTCGGATTGAATCGGCTCCGTCTTCCTGCCGATGCTCAGAAGGCTCCGATCCTTCCTACCGACGACCTAGCCCCCGATTTCGATTGGCGCGACCAAGGTGCTGTCACGCCGGTCAAAGATCAGGGTTCCTGTGGCTCGTGCTGGTCTTTTAGCGCCGTTGGAGCGGTGGAGGGAGCTAATTTCTTGTCAACTGGAAAGCTTGTTAGTCTGAGTGAGCAACAGCTTGTGGATTGTGATCATGAGTGTGATCCCGAGGAAGCTGGTGCATGCGACGCAGGGTGCGGTGGGGGACTAATGAACTCAGCTTTTCAGTACATTTTGAAAGCAGGTGGATTAGAGAAAGAGGAGGACTATCCTTATACTGGCACGGACCGTGGCCCTTGCAAATTCCAAAATTCCAAAGTTGCTGCCTCTGTAGCCAACTTCAGTGTCATTTCTAATGATGCCGACCAAATTGCAGCAAACTTGGTCAAGAATGGCCCTTTAGCAATTGGAATCAATGCAGTTTTCATGCAAACATACATAAAGGGAGTTTCATGCCCATACATATGCTCCAAACGAAATCTAGATCATGGAGTTCTGCTTGTAGGATACGGATCTGCAGGCTTTGCTCCGATACGGTTCAAGGAAAAGCCCTATTGGATAATAAAAAACTCGTGGGGCCAAAACTGGGGAGAAAATGGCTACTACTTAATTTGCAAGGGAAGGAATATCTGTGGATCCGAGTCGATGGTCTCGTCCGTGGCTGCTACCCCAAACTGAGCCATCGTTTGCACCATTATATTAAGGTAACTTACTGTGGCTCTGTAAATATGTTTATATTCTGGGGAATGGTTTATTACACAAAGCACTATGGAACTTGTTCATTCTCTTGCCTGATAGTTATTGTTGTATAATTTGTATGTTGAAATAATGTTGCACTCTGTAGCGCCTTTAGATTCTAAAAATGCACCCAGACGTTCTTATACTGTGTGAT 1364 47.36 MDRLAVFALFFTILLSATVTYGVSSDQINGAQSDDEDLLIRQVVSGADDRRLTAEQHFQNFKLKFGKTYATDEEHDYRFRIFKANLRKAKRHQKLDPDAVHGVTRFSDLTESEFRTNFVGLNRLRLPADAQKAPILPTDDLAPDFDWRDQGAVTPVKDQGSCGSCWSFSAVGAVEGANFLSTGKLVSLSEQQLVDCDHECDPEEAGACDAGCGGGLMNSAFQYILKAGGLEKEEDYPYTGTDRGPCKFQNSKVAASVANFSVISNDADQIAANLVKNGPLAIGINAVFMQTYIKGVSCPYICSKRNLDHGVLLVGYGSAGFAPIRFKEKPYWIIKNSWGQNWGENGYYLICKGRNICGSESMVSSVAATPN 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5337536 5343527 + XM_039029040.1 Bhi04g00217 31826

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00217 371 SUPERFAMILY Cysteine proteinases 54 366 IPR038765 -
Bhi04g00217 371 Pfam Cathepsin propeptide inhibitor domain (I29) 58 114 IPR013201 -
Bhi04g00217 371 Pfam Papain family cysteine protease 143 365 IPR000668 GO:0006508|GO:0008234
Bhi04g00217 371 CDD Peptidase_C1A 145 366 IPR039417 -
Bhi04g00217 371 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 159 170 IPR000169 -
Bhi04g00217 371 PANTHER CYSTEINE PROTEASE RD19C-RELATED 31 367 - -
Bhi04g00217 371 SMART Inhibitor_I29_2 58 114 IPR013201 -
Bhi04g00217 371 PRINTS Papain cysteine protease (C1) family signature 159 174 IPR000668 GO:0006508|GO:0008234
Bhi04g00217 371 PRINTS Papain cysteine protease (C1) family signature 309 319 IPR000668 GO:0006508|GO:0008234
Bhi04g00217 371 PRINTS Papain cysteine protease (C1) family signature 331 337 IPR000668 GO:0006508|GO:0008234
Bhi04g00217 371 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 331 350 IPR025661 -
Bhi04g00217 371 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 307 317 IPR025660 -
Bhi04g00217 371 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 31 367 - -
Bhi04g00217 371 Gene3D Cysteine proteinases 30 367 - -
Bhi04g00217 371 SMART pept_c1 141 367 IPR000668 GO:0006508|GO:0008234
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00217 K01373 CTSF; cathepsin F [EC:3.4.22.41] - csv:101210316 684.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00217 Bhi-Chr4:5337536 Bhi10g01961 Bhi-Chr10:48896384 0 dispersed
Bhi04g00211 Bhi-Chr4:5114522 Bhi04g00217 Bhi-Chr4:5337536 1.38E-60 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1030 . . . . . . . . . . . . . . . . . Bhi04g00217 . . . Hepe10g0121 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00383 Cam11g0429 Cec11g0423 Cco11g0417 Clacu11g0551 Cmu11g0408 Cre11g0894 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000642 3 3 5 4 4 3 3 3 3 3 2 3 6 3 3 4 3 5 5 3 3 3 3 3 3 3 2 4 3 4 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00217 Bhi_Chr04 FPKM 2.247549 2.179135 10.670686 10.456247 3.907517 4.650749 3.870125 42.347752 42.435089 45.553272