Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00228 TTCCTCTCTTCCTCTCTTTTTCCTTTGTTGTTTTTCTTTTCAGATCATCTTCTGGAAAACCAGGACGAGAAGGCGGGAAAAACCCGATTTCCCTTTCCATTTTCCCGCTTCAAATCCGGCTTTCTGGAAAGGGAATCTTGAGGTTTTGAGGAAGGATCCCTGAAAGCAGAATCGATAATGGGAGGGGAGGAGCTAATGCAGGGCGTTACTAAAAATTCAAATGGTCTAGAAGAAACAATTCGTGTTTCTATTAGGTTAAGACCATTGAACGATAAGGAATTAGCTAAAAACGACTCGTCGGATTGGGAATGTATTAACAATAACTCCGTTATGTTCAGAAGTACTTTACCGGAACGCTCTATGTTTCCCCACTCTTACACATTTGATAGAGTATTTGGAATTGACAGTACAACAAAGCAAGTTTACGAAGAAGGGGCTAAAGAAGTTGTTCTTTCTGTGGTCAAAGGAATTAATTCAACAATTTTTGCTTATGGGCAAACAAGCAGTGGAAAGACTTTCACTATGAATGGAGTCACTCAATATTCTGTGGCAGACATTTATAGTTACATCGAATTGCATCAAGACAGAGAATTTGTGCTGAAGTTTTCAGCAATTGAGATATACAACGAAGCTGTTAGAGATCTCCTTAGCTTAGAAAATATCCCACTTAGACTGCTTGATGATCCGGAGAAAGGAACTGTTGTTGAGAAACTTACAGAGGAGACATTGAAAGACAGGAATCATCTCCAGGACCTTCTTTCCTTCTGTGAAGTTCAAAGAAAGATAGGGGAGACGTCTCTGAATGAAACTAGCTCCAGATCCCATCAAATCCTAAGACTAACAATTGAAAGCTCCGCTCGCAAATTCAAGAAGTCTGAAAGTTCAAGTAGTCTCACAGCTACAGTGAATTTTGTTGATCTTGCGGGAAGTGAACGTGCTTCTCAAACAAATTCTGCTGGTACAAGACTGAAAGAAGGTTGCCACATCAACCGTAGTTTGCTGACTTTGGGAACTGTCATTCGTAAATTAAGCAAAGGAAGGAATGGGCACATACCTTATAGAGATTCCAAGCTAACACGCATACTGCAGAATTCTCTCGGCGGTAATGGTCGAACGGCTATCATTTGTACAATGAGTCCTGCACGTAGCCATGTCGAACAATCAAGAAATACATTGCTATTTGCTACTTGTGCAAAAGAGGTGAGTACAAATGCACAAGTCAATGTGGTAGTCTCAGATAAGGCATTGGTGAAGCAGTTGCAAAAAGAATTGGCTAGACTTGAAAGTGAGATGAAGAACTTAAAGCCACTTCCTGTCAAAGGTGATTCTACTTCATTACTGAAAGAGAAAGAACTTCTAATTGAACAGATGGACAAAGAGATAAAGGAATTGACACGGCAACGTGATCTTGCTCAATATCGAATCGAGAATTTATTGCATTCGGTTGGAGAAGATAGGATATTTAAGCTAAGTGAAAATGCAGTACAAACAATACCAGATCTAGTTGACCTAGATCTAGATCTACGTTCTGACGACTCGAGTCTCAAAACTTTCGACACATTTACTGCACATGAAGATAATAGCCCTCACAAGATTGATCCTCTATTCACTATGAGTCATGAGGACAATTTTCTACTAGATAGCAGTACTCCTGAATTGGCTGGACCTGATCCCTATCAGGACTGGGAAGAGATTGCTCAACGTGTTCATGCAAATTCTGAAGATGGGTGTAAAGATGTTCAATGCATTGAACAGGAAGAATCAAAAGAATCACTGGATGAAAATGGTGATTTAACTTTAGCTAGACTGGAAGACAATGAAGGGCAGATGATTAGTAGTTTTGGTACTAATCAAGGGACATCCCCACAAAGGAAGAATAAGGAGATAATTACAATCAACAAAGATTATACTTATGATGGTTTTATGCCAAAAACGGCTGAGATGCAGAAAACATTGAATTGTATTTTAAATCTTTATCCTTCTGAGCAATCTTTCAGCTCAATTGAAGCAGCAAAATCTCGTTTTCAAAACTTGAAGTTGGCCAGAAGCAAAAGTTGTTTGACTGTTCTAATGACCATCCCACCTTCTACTTTGATTGAAAAGGAAGAACAGGATCAGAATATTCAAATTGTTGGATCTGACGTGAACTTCTCTGGACAAGCAGAAGGTAGTCGGAGAAAGCGTGGTTTAAGCTGTGGAAATTTGGAGGGAACTTTGGACACCAAGGACTCGCATTCTGTATGTAGTCGCTGTTCGGAAACCAAAACTTTACAAATAATAGATGAAGATGATGACGATAATACTAGTGTTCTCAACTTTGCTACTGGAAAAAAAGGAAAGAGCAAAAATCGGTTAAAGAAGCGATCTGGTTCGAGGCTGGGAAGGGTCTCTAAAAAGGAAGAACCTAAAGAAACCACACAAGAAGTTCACATGGAAGAGGCACAGGATCTTCAGGCTCATTCTGAGTGGGTTCTAGAGTTCCAAGGTCAACAAAGAGATATAATTGAGCTTTGGGATGCTTGCAATGTACCATTGGTCCACAGATCTTATTTCTTCATCCTTTTTAAAGGAGATCCTTCTGATTCTGTATACATGGAAGTAGAGCTTAGAAGGTTGTTCTTTATAAGAGAAGCCATTTCTCGATCAGTCAGTGCGTCAGGAAGGGGCGACACCATCACGCTAGCTTCAAGTTTGAAGGCTCTAAACCGCGAGAGAGAAATGTTGGCGAGGCGAATGAAAAAGAAGTTCTCAGTGAAAGAAAGAGACGCCCTTTACCAGAAGTGGGGTATTGACTTGAAGACGAAGCAACGAAGCATACAAGTGGCACGAATGCTATGGTCGAGAACAAAGGATTTCGACCATATAAACGAAAGTGCTACCCTTGTGGCAAAGCTCATTGGATTTGTGGAACCTTCTCAGGTCTCTAGGGAGATGTTTGGGCTATCCTTTTCACTACAATCCTTAGATCACAGATCTTTTCCATGGAAAAGGAACATGTCTCTTCCTTTTTGAACATTGTACCATCTCAGTATATATATTTTTTTTATTATGTCTCTACTCATCCAGACAAGTAGAATCCAATTATGTAATGAAAATTCCCTAGAAGATGGACAAGATTCTCTTTAATTTTTTTACCTTTGTTGTTGTATTGTCAGTCTAATTGATTCTTGTTCTTGTGTATATAAAAAATTGCAAAGGAGATTATTTGTAATGGGGAGCGAACATTTTCCTGCTTTGGTTTCGATTGG 3248 39.53 MGGEELMQGVTKNSNGLEETIRVSIRLRPLNDKELAKNDSSDWECINNNSVMFRSTLPERSMFPHSYTFDRVFGIDSTTKQVYEEGAKEVVLSVVKGINSTIFAYGQTSSGKTFTMNGVTQYSVADIYSYIELHQDREFVLKFSAIEIYNEAVRDLLSLENIPLRLLDDPEKGTVVEKLTEETLKDRNHLQDLLSFCEVQRKIGETSLNETSSRSHQILRLTIESSARKFKKSESSSSLTATVNFVDLAGSERASQTNSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHIPYRDSKLTRILQNSLGGNGRTAIICTMSPARSHVEQSRNTLLFATCAKEVSTNAQVNVVVSDKALVKQLQKELARLESEMKNLKPLPVKGDSTSLLKEKELLIEQMDKEIKELTRQRDLAQYRIENLLHSVGEDRIFKLSENAVQTIPDLVDLDLDLRSDDSSLKTFDTFTAHEDNSPHKIDPLFTMSHEDNFLLDSSTPELAGPDPYQDWEEIAQRVHANSEDGCKDVQCIEQEESKESLDENGDLTLARLEDNEGQMISSFGTNQGTSPQRKNKEIITINKDYTYDGFMPKTAEMQKTLNCILNLYPSEQSFSSIEAAKSRFQNLKLARSKSCLTVLMTIPPSTLIEKEEQDQNIQIVGSDVNFSGQAEGSRRKRGLSCGNLEGTLDTKDSHSVCSRCSETKTLQIIDEDDDDNTSVLNFATGKKGKSKNRLKKRSGSRLGRVSKKEEPKETTQEVHMEEAQDLQAHSEWVLEFQGQQRDIIELWDACNVPLVHRSYFFILFKGDPSDSVYMEVELRRLFFIREAISRSVSASGRGDTITLASSLKALNREREMLARRMKKKFSVKERDALYQKWGIDLKTKQRSIQVARMLWSRTKDFDHINESATLVAKLIGFVEPSQVSREMFGLSFSLQSLDHRSFPWKRNMSLPF 944
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5569632 5577517 + XM_039028481.1 Bhi04g00228 31837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00228 944 MobiDBLite consensus disorder prediction 720 734 - -
Bhi04g00228 944 MobiDBLite consensus disorder prediction 720 754 - -
Bhi04g00228 944 Pfam Kinesin motor domain 26 342 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bhi04g00228 944 CDD KISc_CENP_E 20 342 - -
Bhi04g00228 944 Gene3D Kinesin motor domain 10 373 IPR036961 -
Bhi04g00228 944 Coils Coil 388 422 - -
Bhi04g00228 944 ProSiteProfiles Kinesin motor domain profile. 20 342 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bhi04g00228 944 PANTHER KINESIN-LIKE PROTEIN KIN-7J 15 941 - -
Bhi04g00228 944 Pfam Domain of unknown function (DUF3490) 767 926 IPR021881 -
Bhi04g00228 944 MobiDBLite consensus disorder prediction 735 754 - -
Bhi04g00228 944 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 367 IPR027417 -
Bhi04g00228 944 PRINTS Kinesin heavy chain signature 97 118 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bhi04g00228 944 PRINTS Kinesin heavy chain signature 206 223 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bhi04g00228 944 PRINTS Kinesin heavy chain signature 242 260 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bhi04g00228 944 PRINTS Kinesin heavy chain signature 292 313 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bhi04g00228 944 Coils Coil 351 378 - -
Bhi04g00228 944 SMART kinesin_4 18 350 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bhi04g00228 944 PANTHER CENTROMERE PROTEIN E 15 941 - -
Bhi04g00228 944 ProSitePatterns Kinesin motor domain signature. 241 252 IPR019821 GO:0003777|GO:0005524|GO:0007018
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00228 K11498 CENPE; centromeric protein E - csv:101212680 1626.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00228 Bhi-Chr4:5569632 Bhi05g01255 Bhi-Chr5:45477325 0 dispersed
Bhi04g00228 Bhi-Chr4:5569632 Bhi05g01797 Bhi-Chr5:57058970 6.00E-84 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1046 . . . . . . . . Cmo05g00291 Cmo12g00378 . . . Car12g00404 . . Cpe07g00383 Bhi04g00228 . . . . . . Cla08g01443 Cam08g1924 Cec08g1499 Cco08g1635 Clacu08g1614 . Cre08g1400 . . Cone17ag1382 . . . . Cme03g01903 . Blo18g00788 . . . . Bma01g00738 . . . . Cma12g00427 Cma05g00285 Car05g00235 . Cpe11g00236 . . . . . . . . . . . . . . . Lsi08g01346 Csa02g02109 Chy03g01407 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008666 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00228 Bhi_Chr04 FPKM 7.331606 10.201876 2.15338 2.621026 3.172611 5.052699 4.421244 26.990685 30.21084 30.636162