Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00232 AGATAACGTGGAGAGATTTTATAGAATCAAAAGACATAAGAAAGGGCGAAAACAAAAGAGTTGGGTATCTCAAAATCAGGGAGAGGAGAAAAAAAAAAAAAAAAAAAAAGCTTCAGATCTGATCTGATCGGAGATCCTCTTCTTCCCTGTCCAAACCGGAAAAAATGTCGTCAACGTTCAGTGGTGATGAAACGGCACCCTTCTTTGGCTTTCTCGGCGCCGCTGCGGCCCTGGTTTTCTCCTGTATGGGAGCCGCCTACGGAACGGCGAAGAGCGGGGTTGGTGTGGCGTCAATGGGAGTGATGAGGCCGGAATTGGTGATGAAGTCGATTGTTCCGGTGGTTATGGCTGGAGTTTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACGGGGATTAACCCGAAGGCTAAATCTTATTACCTTTTTGATGGTTACGCTCATCTTTCCTCTGGTCTTGCTTGCGGCCTCGCCGGTCTCTCTGCTGGCATGGCTATCGGCATCGTCGGCGATGCGGGTGTTAGGGCCAATGCACAACAACCTAAGCTTTTTGTTGGGATGATTCTCATTCTAATTTTCGCCGAAGCACTTGCCCTTTATGGACTTATTGTTGGTATTATTCTCTCCTCTCGTGCTGGTCAATCAAGAGCTGATTAAGTGAATGTTTTGCGCTTGGAATTTGTGTATTTTGTCTCTTTTTTTCTTTCTTTCATGAATTGTTTTTGTAGTTCTCTGATTAGAAATGGTCATGGCTAAGTTTTACTTTCTCAAATATTCTTGTGTTGTGTGATTTCCATACCACACGGATCCTATACTCATAAGGATTTGAAATCAATCACTCTCTCAATAAACATAAAACATTGTTTCC 873 42.84 MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5780701 5782914 - XM_039029734.1 Bhi04g00232 31841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00232 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Bhi04g00232 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Bhi04g00232 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bhi04g00232 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bhi04g00232 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bhi04g00232 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bhi04g00232 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Bhi04g00232 165 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Bhi04g00232 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Bhi04g00232 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Bhi04g00232 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Bhi04g00232 165 Gene3D - 11 162 IPR035921 -
Bhi04g00232 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078|GO:0033177|GO:1902600
Bhi04g00232 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00232 Bhi-Chr4:5780701 Bhi09g02673 Bhi-Chr9:71752658 1.21E-112 dispersed
Bhi04g00232 Bhi-Chr4:5780701 Bhi04g00233 Bhi-Chr4:5785471 3.53E-113 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00232 K02155 - pvy:116145974 288.885