Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00233 GCGTGAGTATTTCAGAGAGTTGTAACGAGGCGACAAAGGAGAGAAGAGGAAGAAGAGAGAGAGAGAGAGAGAGAGATATCGAGATCTGATCTGATCGGAGAACTTCTTCATCTTCACCGTTGAACCCAGAAAAGATGTCGTCAACTTTCAGCGGCGATGAAACGGCACCCTTCTTCGGCTTTCTGGGCGCCGCTGCAGCCCTCGTCTTCTCCTGTATGGGAGCTGCTTATGGGACGGCGAAGAGCGGGGTGGGAGTTGCGTCTATGGGAGTAATGAGGCCTGAACTGGTGATGAAGTCGATTGTTCCGGTCGTTATGGCTGGAGTTTTGGGTATTTATGGTCTTATTATTGCTGTGATTATTAGTACAGGGATTAACCCCAAGGCTAAATCTTATTACCTCTTCGATGGTTACGCACATCTCTCATCTGGGCTTGCCTGTGGCCTTGCCGGTCTGTCCGCTGGCATGGCTATCGGGATCGTCGGTGATGCGGGTGTTAGAGCCAACGCACAGCAGCCTAAGCTTTTCGTTGGGATGATTCTTATTTTAATTTTTGCCGAAGCTCTGGCACTCTATGGACTTATTGTGGGCATTATTCTCTCTTCCCGAGCTGGTCAGTCAAGAGCTGATTAAGTGGATGCTTTGTGTTTGGACTGGAGTTTGTGTAGTATGTCTCCTCTTTTTGTCAAGAATTGATTTTGTTCTCTTTTGAGTAAATGGGTTATTATTATGGTTTAAGCCTACTCTCTCAAATGTTCTTGTGAGGTGTGATTGCCATACCGCACGGATCCTGTTGTAGTGATATATGGATTTGGAATTAATTATTCTTCTCAATAAAATATTAAACTCTGTTACTTTTAATATTA 865 45.09 MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 5785471 5787138 - XM_039029738.1 Bhi04g00233 31842

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00233 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Bhi04g00233 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Bhi04g00233 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bhi04g00233 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bhi04g00233 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bhi04g00233 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bhi04g00233 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Bhi04g00233 165 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Bhi04g00233 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Bhi04g00233 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Bhi04g00233 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Bhi04g00233 165 Gene3D - 11 162 IPR035921 -
Bhi04g00233 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078|GO:0033177|GO:1902600
Bhi04g00233 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00233 K02155 ATPeV0C, ATP6L; V-type H+-transporting ATPase 16kDa proteolipid subunit - pvy:116145974 288.885
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00233 Bhi-Chr4:5785471 Bhi09g02673 Bhi-Chr9:71752658 1.21E-112 dispersed
Bhi04g00232 Bhi-Chr4:5780701 Bhi04g00233 Bhi-Chr4:5785471 3.53E-113 tandem
       

Deco-Alignment


Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1050 . . . . . . . . Cmo05g00293 Cmo12g00375 . . . Car12g00401 . . Cpe07g00380 Bhi04g00233 . . . Hepe10g0130 . . Cla08g01441 Cam08g1922 Cec08g1497 . Clacu08g1612 . Cre08g1398 . . Cone17ag1386 Cone20ag0095 . . . Cme03g01900 Blo17g00753 Blo18g00785 Bda08g01232 Bda01g01524 Bpe02g01721 Bpe05g00130 Bma01g00735 Bma05g00155 . . . Cma12g00425 Cma05g00287 Car05g00237 . Cpe11g00238 . . . . . . . . . . . . . . . Lsi08g01343 Csa02g02112 Chy03g01404 .
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00444 . 1 998 Primary Pumps ATPases(2) AT1G10130 82.4 0.0e+00 1616.3
Bhi04g00445 . 1 870 Primary Pumps ATPases(2) AT1G10130 82.3 0.0e+00 1410.2
Bhi10g00598 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.0 0.0e+00 1338.9
Bhi04g00220 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.4 1.8e-297 1019.2
Bhi05g01790 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.0e-292 1003.4
Bhi04g00218 . 1 775 Primary Pumps ATPases(2) AT2G28520 61.2 3.4e-283 971.8
Bhi04g00219 . 1 783 Primary Pumps ATPases(2) AT2G28520 61.1 9.8e-283 970.3
Bhi05g01790 . 6 818 Primary Pumps ATPases(2) AT2G21410 76.0 0.0e+00 1234.9
Bhi04g00220 . 1 808 Primary Pumps ATPases(2) AT2G21410 74.0 0.0e+00 1204.9
Bhi04g00219 . 1 788 Primary Pumps ATPases(2) AT2G21410 71.7 0.0e+00 1156.0
Bhi04g00218 . 1 780 Primary Pumps ATPases(2) AT2G21410 71.8 0.0e+00 1154.4
Bhi10g00598 . 9 819 Primary Pumps ATPases(2) AT2G21410 62.3 1.3e-298 1023.1
Bhi05g01790 . 8 818 Primary Pumps ATPases(2) AT4G39080 77.2 0.0e+00 1238.0
Bhi04g00220 . 1 808 Primary Pumps ATPases(2) AT4G39080 74.3 0.0e+00 1198.0
Bhi04g00218 . 1 780 Primary Pumps ATPases(2) AT4G39080 72.1 0.0e+00 1150.6
Bhi04g00219 . 1 788 Primary Pumps ATPases(2) AT4G39080 71.8 0.0e+00 1147.5
Bhi10g00598 . 9 819 Primary Pumps ATPases(2) AT4G39080 63.4 2.4e-297 1018.8
Bhi04g00232 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.2e-60 229.2
Bhi04g00233 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.2e-60 229.2
Bhi09g02673 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.2e-60 229.2
Bhi04g00232 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.2e-66 249.6
Bhi04g00233 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.2e-66 249.6
Bhi09g02673 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 4.9e-66 248.4
Bhi04g00232 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.8e-74 274.2
Bhi04g00233 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.8e-74 274.2
Bhi09g02673 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.8e-74 274.2
Bhi09g02673 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 8.4e-53 203.8
Bhi04g00232 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.9e-52 202.6
Bhi04g00233 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.9e-52 202.6
Bhi04g01015 . 6 180 Primary Pumps ATPases(2) AT2G25610 85.1 6.3e-70 261.5
Bhi09g02278 . 4 180 Primary Pumps ATPases(2) AT2G25610 81.4 3.1e-69 259.2
Bhi09g02277 . 4 198 Primary Pumps ATPases(2) AT2G25610 73.8 7.2e-66 248.1
Bhi09g02279 . 4 137 Primary Pumps ATPases(2) AT2G25610 71.6 8.0e-41 164.9
Bhi04g00232 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 6.1e-60 227.6
Bhi04g00233 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 6.1e-60 227.6
Bhi09g02673 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 6.1e-60 227.6
Bhi04g01015 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.8 8.1e-72 267.7
Bhi09g02278 . 11 180 Primary Pumps ATPases(2) AT4G32530 76.5 8.1e-72 267.7
Bhi09g02277 . 11 198 Primary Pumps ATPases(2) AT4G32530 70.2 1.9e-68 256.5
Bhi09g02279 . 11 142 Primary Pumps ATPases(2) AT4G32530 75.0 1.8e-42 170.2
Bhi08g00646 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.3 0.0e+00 1664.4
Bhi08g00646 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1668.7
Bhi04g00444 . 1 998 Primary Pumps ATPases(2) AT1G10130 82.4 0.0e+00 1616.3
Bhi04g00445 . 1 870 Primary Pumps ATPases(2) AT1G10130 82.3 0.0e+00 1410.2
Bhi08g00646 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.5 0.0e+00 1315.1
Bhi02g02086 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 2.0e-57 219.2
Bhi05g01683 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 1.2e-267 919.5
Bhi05g01684 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 1.2e-267 919.5
Bhi11g02100 . 2 109 Primary Pumps ATPases(2) AT3G01390 80.6 3.4e-37 151.8
Bhi11g02099 . 2 109 Primary Pumps ATPases(2) AT3G01390 80.6 3.4e-37 151.8
Bhi11g02098 . 2 109 Primary Pumps ATPases(2) AT3G01390 80.6 3.4e-37 151.8
Bhi12g01185 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.8 4.5e-182 634.8
Bhi05g02069 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.2 5.1e-116 414.8
Bhi05g02068 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.2 5.1e-116 414.8
Bhi11g02811 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.9 1.3e-207 719.9
Bhi11g02812 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.9 1.3e-207 719.9
Bhi11g02813 . 1 369 Primary Pumps ATPases(2) AT3G42050 79.4 2.0e-168 589.7
Bhi04g00232 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.8e-74 274.2
Bhi04g00233 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.8e-74 274.2
Bhi09g02673 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.8e-74 274.2
Bhi05g01683 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 1.9e-268 922.2
Bhi05g01684 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 1.9e-268 922.2
Bhi05g01683 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 2.5e-265 911.8
Bhi05g01684 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 2.5e-265 911.8
Bhi10g00598 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.0 0.0e+00 1338.9
Bhi04g00220 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.4 1.8e-297 1019.2
Bhi05g01790 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.0e-292 1003.4
Bhi04g00218 . 1 775 Primary Pumps ATPases(2) AT2G28520 61.2 3.4e-283 971.8
Bhi04g00219 . 1 783 Primary Pumps ATPases(2) AT2G28520 61.1 9.8e-283 970.3
Bhi11g03018 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 9.8e-192 666.8
Bhi09g00220 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.3 0.0e+00 1171.0
Bhi05g01683 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 1.2e-267 919.5
Bhi05g01684 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 1.2e-267 919.5
Bhi05g01683 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 1.9e-268 922.2
Bhi05g01684 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 1.9e-268 922.2
Bhi05g01683 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 2.5e-265 911.8
Bhi05g01684 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 2.5e-265 911.8
Bhi12g01185 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.8 4.5e-182 634.8
Bhi05g02069 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.2 5.1e-116 414.8
Bhi05g02068 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.2 5.1e-116 414.8
Bhi02g02086 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 2.0e-57 219.2
Bhi11g02100 . 2 109 Primary Pumps ATPases(2) AT3G01390 80.6 3.4e-37 151.8
Bhi11g02099 . 2 109 Primary Pumps ATPases(2) AT3G01390 80.6 3.4e-37 151.8
Bhi11g02098 . 2 109 Primary Pumps ATPases(2) AT3G01390 80.6 3.4e-37 151.8
Bhi11g02811 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.9 1.3e-207 719.9
Bhi11g02812 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.9 1.3e-207 719.9
Bhi11g02813 . 1 369 Primary Pumps ATPases(2) AT3G42050 79.4 2.0e-168 589.7
Bhi10g00598 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.0 0.0e+00 1338.9
Bhi04g00220 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.4 1.8e-297 1019.2
Bhi05g01790 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.0e-292 1003.4
Bhi04g00218 . 1 775 Primary Pumps ATPases(2) AT2G28520 61.2 3.4e-283 971.8
Bhi04g00219 . 1 783 Primary Pumps ATPases(2) AT2G28520 61.1 9.8e-283 970.3
Bhi05g01790 . 6 818 Primary Pumps ATPases(2) AT2G21410 76.0 0.0e+00 1234.9
Bhi04g00220 . 1 808 Primary Pumps ATPases(2) AT2G21410 74.0 0.0e+00 1204.9
Bhi04g00219 . 1 788 Primary Pumps ATPases(2) AT2G21410 71.7 0.0e+00 1156.0
Bhi04g00218 . 1 780 Primary Pumps ATPases(2) AT2G21410 71.8 0.0e+00 1154.4
Bhi10g00598 . 9 819 Primary Pumps ATPases(2) AT2G21410 62.3 1.3e-298 1023.1
Bhi05g01790 . 8 818 Primary Pumps ATPases(2) AT4G39080 77.2 0.0e+00 1238.0
Bhi04g00220 . 1 808 Primary Pumps ATPases(2) AT4G39080 74.3 0.0e+00 1198.0
Bhi04g00218 . 1 780 Primary Pumps ATPases(2) AT4G39080 72.1 0.0e+00 1150.6
Bhi04g00219 . 1 788 Primary Pumps ATPases(2) AT4G39080 71.8 0.0e+00 1147.5
Bhi10g00598 . 9 819 Primary Pumps ATPases(2) AT4G39080 63.4 2.4e-297 1018.8
Bhi04g00232 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.2e-60 229.2
Bhi04g00233 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.2e-60 229.2
Bhi09g02673 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.2e-60 229.2
Bhi09g02673 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 8.4e-53 203.8
Bhi04g00232 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.9e-52 202.6
Bhi04g00233 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.9e-52 202.6
Bhi04g00232 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 6.1e-60 227.6
Bhi04g00233 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 6.1e-60 227.6
Bhi09g02673 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 6.1e-60 227.6
Bhi04g00232 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.2e-66 249.6
Bhi04g00233 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.2e-66 249.6
Bhi09g02673 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 4.9e-66 248.4
Bhi04g00232 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.8e-74 274.2
Bhi04g00233 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.8e-74 274.2
Bhi09g02673 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.8e-74 274.2
Bhi04g01015 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.8 8.1e-72 267.7
Bhi09g02278 . 11 180 Primary Pumps ATPases(2) AT4G32530 76.5 8.1e-72 267.7
Bhi09g02277 . 11 198 Primary Pumps ATPases(2) AT4G32530 70.2 1.9e-68 256.5
Bhi09g02279 . 11 142 Primary Pumps ATPases(2) AT4G32530 75.0 1.8e-42 170.2
Bhi04g01015 . 6 180 Primary Pumps ATPases(2) AT2G25610 85.1 6.3e-70 261.5
Bhi09g02278 . 4 180 Primary Pumps ATPases(2) AT2G25610 81.4 3.1e-69 259.2
Bhi09g02277 . 4 198 Primary Pumps ATPases(2) AT2G25610 73.8 7.2e-66 248.1
Bhi09g02279 . 4 137 Primary Pumps ATPases(2) AT2G25610 71.6 8.0e-41 164.9
Bhi11g03018 . 1 351 Primary Pumps ATPases(2) AT3G28710 94.3 8.5e-199 690.3
Bhi11g03018 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 9.8e-192 666.8
Bhi08g00646 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.3 0.0e+00 1664.4
Bhi08g00646 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.5 0.0e+00 1315.1
Bhi04g00444 . 1 998 Primary Pumps ATPases(2) AT1G10130 82.4 0.0e+00 1616.3
Bhi04g00445 . 1 870 Primary Pumps ATPases(2) AT1G10130 82.3 0.0e+00 1410.2
Bhi08g00646 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1668.7
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000593 4 3 2 4 4 2 6 2 1 3 2 3 4 3 3 5 3 7 5 3 3 4 3 3 2 3 3 6 3 3 102
       

Transcriptome


Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00233 Bhi_Chr04 FPKM 35.244774 35.927864 19.227644 19.263672 23.400896 26.665606 25.583342 7.202034 6.800768 7.496531