Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00239 AAAAGAAAAATAGAGAGAGATTCCTTTGTCCCTGTGTTGTGCTTACAACTGTTGTTTCCACAGATTTTCAATCTTTTTCTCCTCCTTCTTCTCTTTTTCTTTTTTCCTTTCCCCAGTTTTCTTCTTCATCTCTCCTTCTCTTTCCTTCTCACTGATGATCTGATGGAGGACGAGATGAGGAAGATGGGTCAGCCATTTGAGCTGACTGGAAGTAAAAAATTCTAACGATGATTTCTTAAGTGAATCCTTGTTTGGTCTTCTGATGCCAGTGGAGCCTTTTTATTACTGTGTTTGTGTTGGTTATTAGTTTTGGAGTCACAAATGGATGACAGTGGACACCGTGAGAATGGAAGGCACAAACCAGATCAGTATAAGCCAGCTCAGGGTCAGTGGATGATGCAGCATCAGCCATCCATGAAGCAGATAATGGCAATTATGGCTGAAAGAGATGCAGCCATCCAAGAGAGAAATCTGGCCCTTTCCGAGAAAAAGGCTGCACTAGCGGAGCGAGACATGGCTTATCTACAGCGAGATGCTGCAATTGCAGAGAGGAACAACGCTCTTTTGGAAAGGGACAATGCCATTGCTACTCTTCAGTATCGTGAAAACTCCCTAACAAATAACAACAATGTTTCATGTCCACCAGGATGCCAAATTGCTAGGGGAGTGAAGCATATACATCATCCACAGCAGCAACACACGCATCATGTGCCCCACATGAATGAGAGTAATTACAATTCCAGAGAAATGCTTGCTTCAAATGATCCTTGCCCGGTCTCTCCCGTTGCTTCTGAATCAACAAAGGCACGGCGAAACAAGCGTGCAAAGGAGGGAAAGACAGTTACAACACCAGACAAGAAGGTTCCAAGAGGTCCAAGGAAGGTCAAAAGAGAGACTGAAGACTTGAATAAGATAATGTTAGGAAAGTCACAAGAATGGAAGGATGGAATTGGTATCATGGGTGGAGGTGATGATCTTAATAAACAGTTGGTATCAAAATCAGATTGGAAGGGACAGGATTTAGGATTGAACCAGGTTGCCTTTGATGAATCAACGATGCCAGCTCCTATATGCTCCTGCACAGGAGTTATAAGACAATGCTACAAATGGGGAAATGGTGGATGGCAGTCTGCATGTTGTACTACCACCATCTCAATGTATCCATTACCCCCTGTTCCCAACAAACGACACGCACGGCTGGGTGGTCGGAAAATGAGTGGGAGCGCTTTCAACAAGCTGCTTAGCCGCCTCGCAGCTGAAGGCCACGATCTGTCCGCTCCAGTTGATCTTAAAAATCACTGGGCAAAGCATGGAACAAATCGTTACATCACCATCAAGTAGTCACTAGCTTATTAAGGAAGTAGCGCACAGAGAGTAGAAAAAATGGAGGGAATCCCCAAACTAGCTAAGGCATACTGCCTCGGAATTTCCTTCCACTTTCAGCAAAAGAATAAAGGATAGCATAACATCCATAAAGAGGAGTTAGAAGCTATCTCCAGCCTCTCACTTTCACTACGTTTGTTCGAAAGCAAGGGCAGAGTCAAGTTCTCCAACGCCAAGGCAATTCTTTACTTTCCTCTTTTTTTGAAGTGCCCTTCTCTGTAAAGCCTTGGGGATATCGTACTTGCTTCAAATAACTGTAAAGGTATGTGTTTATTTTTATGTTCAAGGTTGTACTTAAAATATCAGAATATGACCGTCATCATTTTGTATCATCTTTCAAGATGCATATCTTGTTTATGCATCTTCAATGAAACTCAATCCCATTAGGTACGGTATGCCTTGTTTATGCATCTTCAATGAAACTCAATCCCATTAATCAGCA 1825 42.79 MDDSGHRENGRHKPDQYKPAQGQWMMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAYLQRDAAIAERNNALLERDNAIATLQYRENSLTNNNNVSCPPGCQIARGVKHIHHPQQQHTHHVPHMNESNYNSREMLASNDPCPVSPVASESTKARRNKRAKEGKTVTTPDKKVPRGPRKVKRETEDLNKIMLGKSQEWKDGIGIMGGGDDLNKQLVSKSDWKGQDLGLNQVAFDESTMPAPICSCTGVIRQCYKWGNGGWQSACCTTTISMYPLPPVPNKRHARLGGRKMSGSAFNKLLSRLAAEGHDLSAPVDLKNHWAKHGTNRYITIK 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5910249 5913537 + XM_039029786.1 Bhi04g00239 31848

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00239 339 PANTHER - 1 339 IPR010409 -
Bhi04g00239 339 Coils Coil 58 85 - -
Bhi04g00239 339 MobiDBLite consensus disorder prediction 1 15 - -
Bhi04g00239 339 SMART GAGA_bind_2 1 339 IPR010409 -
Bhi04g00239 339 MobiDBLite consensus disorder prediction 1 22 - -
Bhi04g00239 339 MobiDBLite consensus disorder prediction 141 189 - -
Bhi04g00239 339 MobiDBLite consensus disorder prediction 160 189 - -
Bhi04g00239 339 PANTHER PROTEIN BASIC PENTACYSTEINE6 1 339 - -
Bhi04g00239 339 Pfam GAGA binding protein-like family 1 339 IPR010409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00239 - - - bhj:120076011 669.077
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00239 Bhi-Chr4:5910249 Bhi05g01776 Bhi-Chr5:56579211 4.01E-117 dispersed
Bhi04g00239 Bhi-Chr4:5910249 Bhi04g00240 Bhi-Chr4:5910249 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1060 . . . . . . . . Cmo05g00298 Cmo12g00369 . . . Car12g00396 . . Cpe07g00376 Bhi04g00239 . . . . . . . . . . . . . . . . . . . . . Blo17g00751 . Bda08g01227 Bda01g01528 Bpe02g01724 Bpe05g00134 . . . . . . Cma05g00293 Car05g00242 . Cpe11g00243 . . . . . . . . . . . . . . . . Csa02g02118 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi12g00979 . 1 280 BBR/BPC Transcription factor family AT2G01930 57.4 1.0e-85 314.3
Bhi12g00980 . 1 278 BBR/BPC Transcription factor family AT2G01930 51.4 5.1e-69 258.8
Bhi12g00980 . 159 278 BBR/BPC Transcription factor family AT2G35550 58.3 3.0e-40 162.9
Bhi04g00240 . 232 346 BBR/BPC Transcription factor family AT2G35550 60.0 2.8e-38 156.4
Bhi04g00239 . 225 339 BBR/BPC Transcription factor family AT2G35550 60.0 2.8e-38 156.4
Bhi05g01778 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 4.1e-37 152.5
Bhi05g01777 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 4.1e-37 152.5
Bhi05g01776 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 4.1e-37 152.5
Bhi12g00979 . 1 280 BBR/BPC Transcription factor family AT1G68120 50.2 1.1e-70 264.2
Bhi04g00240 . 240 346 BBR/BPC Transcription factor family AT1G68120 57.0 8.3e-37 151.8
Bhi04g00239 . 233 339 BBR/BPC Transcription factor family AT1G68120 57.0 8.3e-37 151.8
Bhi05g01778 . 1 313 BBR/BPC Transcription factor family AT2G21240 63.2 7.6e-84 308.1
Bhi05g01777 . 1 313 BBR/BPC Transcription factor family AT2G21240 63.2 7.6e-84 308.1
Bhi05g01776 . 1 313 BBR/BPC Transcription factor family AT2G21240 63.2 7.6e-84 308.1
Bhi04g00240 . 8 346 BBR/BPC Transcription factor family AT2G21240 50.4 1.5e-60 230.7
Bhi04g00239 . 1 339 BBR/BPC Transcription factor family AT2G21240 50.4 1.5e-60 230.7
Bhi05g01778 . 1 313 BBR/BPC Transcription factor family AT4G38910 59.6 4.6e-70 262.3
Bhi05g01777 . 1 313 BBR/BPC Transcription factor family AT4G38910 59.6 4.6e-70 262.3
Bhi05g01776 . 1 313 BBR/BPC Transcription factor family AT4G38910 59.6 4.6e-70 262.3
Bhi04g00240 . 95 346 BBR/BPC Transcription factor family AT5G42520 59.7 2.4e-79 293.1
Bhi04g00239 . 88 339 BBR/BPC Transcription factor family AT5G42520 59.7 2.4e-79 293.1
Bhi12g00980 . 159 278 BBR/BPC Transcription factor family AT2G35550 58.3 3.0e-40 162.9
Bhi04g00240 . 232 346 BBR/BPC Transcription factor family AT2G35550 60.0 2.8e-38 156.4
Bhi04g00239 . 225 339 BBR/BPC Transcription factor family AT2G35550 60.0 2.8e-38 156.4
Bhi05g01778 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 4.1e-37 152.5
Bhi05g01777 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 4.1e-37 152.5
Bhi05g01776 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 4.1e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004398 3 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
843 PF06217 GAGA_bind 1.40E-105 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00239 Bhi_Chr04 FPKM 14.058771 14.684258 18.119669 17.372078 28.607222 26.546062 29.636473 21.76469 20.043598 21.801981