Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00279 GATTCTACTGTCTCTTGGCCTATAAATGGACAGGCAGAAACTGAGCAACAAAAGGGTACCTGTGGCTATATTACCTGTTCATATCTTTCTCATTTGCCTAGCCTTTTTCTTTCATATTTCATCACCTGATGATCTATAGCCTTTACTTTCAAAAACCCGCTTACGTGTATGATGTGAAATCCTGATCCCATCTCAGAATTTCAGCTCTAAACCTGCTATACTCTCATCTTACGATGATTTCAAGTTCATTACTTGACTGGGAGCAAAAATGGGGTGACCTCCAGAGAGGAATAATCACAAACCTCAGAAGGTGAAACTAAAACGCGTATTATGCATCAGAAAAGAGACAAATGTATGGGAACAGCAAGTGATTAATGGAAAAAAATTGCGATATTCACTACACACTCAACGCAGACCAACTGTTTGTTAAAAGGTCCAAACCAGCAATGAATGTTGTTGGGTTAGGTGACCGAAAAAACAGCAAGCTGCGGTAGCCCCCAGGCCATGGCCTACCTTGATTGCTAGCTTATGCCTACAACTTGGTCATGGAAGAATGATCAGATGGAAACCCATTTCTGAAAAGCCACCAACTTCTTCTCTTAGAGGGTGGGTGGAAGTTGGAATGAGGCAAAGCACATGCTTTTGTTAACTGCTTTTTGTGGTCGTGGGCTGATTGTTCGGATAAAATGGGGATGTCGGCATTCACAATTACCTCAGTTTTTCTTTATTTCTGCCTCTCCTCTGTTGTCTCTCGACACCTCCACTTTCCACTTCCTTCTGCCCTCACTCCTGTTTTTTGGCCATTTCGGTTAATTGTGCTCAAACTGACGCTGAAACTGAAACCCCATTCTTTTTCCCTTTTCCATTATATACTGTCCACGTGGCTTCTTCTTTGTCCCCATCTTTTCTACTGTTCACGAAAAGATTGGTTGAAATATCTTTTTCCCATTACTGACCAATATAAATATAAACCTCTTTCTGCGTTTTTCTTCATTCGATTCCCTGAAATTCTTGTTTTTGTGTCTGCGGTTTACTTGGATTAAAAGAAAATGGCTTCCCCATTAAGTGTTTTTCTTCTGTTAGCTGTGTTTTCTCTTGGTAATGCTGGAAATTTGGCTTTTGCGACTGTTTTTACGCTTCAGAATCATTGCAGCTATACACTATGGCCGGGAACGCTCTCCGGCAATGGTGCGGCGGTTCTTGGCGACGGTGGATTCCCTCTAGCACCCGGTGCGTCGGTGCAATTGACTGCTCCGCCGGGCTGGTCCGGACGGTTCTGGGCACGAACCGGCTGTGACTTCGACGGCTCTGGCAATGGGAAATGCCAGACGGGTGACTGCGGTGGCACGCTTAAATGCATCGGCGGCGGTGTTCCGCCGGTCACGCTGGCGGAATTCACCATCGGTTCAAGCAGTGGCGATATGGATTTCTACGACATTAGCCTCGTCGATGGCTATAATGTGGGTATTGGCGTCCGGGCAAACGGCGGCACCGGCGACTGCCAGTATGCCGGCTGCGTCGCGGACGTGAACGGAATCTGCCCATCGGAGTTGCAGGTAACCAATTCCGGCTCCGTCGTGGCCTGTAAGAGCGCGTGCGCTGCCTTCAATACGCCGGAATTTTGCTGCACCGATGATCACTCGACGCCGCAGACATGCCCGCCGACGCCGTACTCAGAGATGTTCAAGAACGCCTGTCCGGCGGCGTACAGCTATGCATACGACGACGCTTCGAGCACGTGCACATGTGCCGGGTCGGACTACTTGATTAGCTTTTTCCCGTCGGGTTGATCCATTAGTATTGAATTATCTTCTTTTTACCTTATTTCTTAAAATTCCATTTTTACTTTAATTTTATGAATCATTTAAGTCTTTAAAAAAATAAAATAAAAAATAAAAAATCTTGTAATCCATTGTAGTATTAAATAGTAACCAACTCCGTTTAAATGTTTAGAAATA 1958 45.3 MASPLSVFLLLAVFSLGNAGNLAFATVFTLQNHCSYTLWPGTLSGNGAAVLGDGGFPLAPGASVQLTAPPGWSGRFWARTGCDFDGSGNGKCQTGDCGGTLKCIGGGVPPVTLAEFTIGSSSGDMDFYDISLVDGYNVGIGVRANGGTGDCQYAGCVADVNGICPSELQVTNSGSVVACKSACAAFNTPEFCCTDDHSTPQTCPPTPYSEMFKNACPAAYSYAYDDASSTCTCAGSDYLISFFPSG 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6654517 6656609 - XM_039030260.1 Bhi04g00279 31888

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00279 246 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Bhi04g00279 246 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Bhi04g00279 246 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Bhi04g00279 246 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Bhi04g00279 246 PRINTS Pathogenesis-related protein signature 234 243 IPR001938 -
Bhi04g00279 246 Gene3D Thaumatin 26 244 IPR037176 -
Bhi04g00279 246 SUPERFAMILY Osmotin, thaumatin-like protein 27 245 IPR037176 -
Bhi04g00279 246 Pfam Thaumatin family 32 244 IPR001938 -
Bhi04g00279 246 PANTHER OS03G0233200 PROTEIN 22 243 IPR001938 -
Bhi04g00279 246 PIRSF PR5 1 246 IPR001938 -
Bhi04g00279 246 CDD TLP-PA 27 242 - -
Bhi04g00279 246 ProSitePatterns Thaumatin family signature. 88 103 IPR017949 -
Bhi04g00279 246 ProSiteProfiles Thaumatin family profile. 25 246 IPR001938 -
Bhi04g00279 246 PANTHER PATHOGENESIS-RELATED PROTEIN 5 22 243 - -
Bhi04g00279 246 SMART tha2 28 244 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00279 - - - csv:101217945 468.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00279 Bhi-Chr4:6654517 Bhi09g00616 Bhi-Chr9:13160835 4.84E-87 dispersed
Bhi12g01355 Bhi-Chr12:41189333 Bhi04g00279 Bhi-Chr4:6654517 7.58E-77 dispersed
Bhi04g00278 Bhi-Chr4:6654517 Bhi04g00279 Bhi-Chr4:6654517 1.24E-175 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g889 . . . . . . . . Cmo05g00228 . . . . . . . . Bhi04g00279 . . . Hepe10g0162 . . . . . . . . . . . . . . . . Cme03g01981 Blo17g00815 Blo18g00825 Bda08g01300 . . Bpe05g00077 Bma01g00772 Bma05g00106 . . . . Cma05g00222 Car05g00183 . Cpe11g00183 . . . . . . . . . . . . . . . Lsi08g01419 Csa02g02024 Chy03g01487 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012457 1 2 2 1 1 1 1 1 1 2 0 1 0 1 1 0 1 0 1 1 1 3 1 1 0 1 0 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00279 Bhi_Chr04 FPKM 3.904834 4.763214 1.330629 1.470554 1.515189 1.009423 1.07618 6.198195 6.453588 5.534616