Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00282 GTGAATATTGTTTAGGGCACACGGCTGCGAGAAGCTTCCATTTTCAAACGTATATGTTTCGTTTTTCCGTCAAACGCGTTCGTCTCCAGTTTTTAGATTTGCTTTTTGATCCATATCGGAACGCAGGATCGGCCGGTTTGTTCTTCTTAATCACTAGGTGGGGTGTGTAGATATGGCGAGCGGGTTTGGGGAATCGACAAGTAGGCAACCTCAAAGCCCTTCTTGTTCCGACAACAATGGTGATGCTAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCCTATGTGGTCATCTTTTCTGTTGGCCATGCCTTTATAAGTGGCTGCATATTCATTCCCATCCCCAGGAATGTCCAGTTTGCAAGGCTATCATAGAAGAGCAAAAATTGGTTCCTTTATATGGTAGGGGTAAGACATCGACTGACCCAAGATCAAAAAGTATTCCTGGAATTAACATTCCTAATCGGCCTGCGGGACAGAGACCCGAAGCAGCAGGTCCTCCTCCAGAACCAAATCCTTTTCCTCACAATGGGTTTGGATTCATGGGAGGTCTTGGAGGGTTTGCTCCAATGGCGTCGACGAGGTTTGGCAATTTCACGTTGTCTGCAGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATACGCAGATCCAAGCATGTACGGTGCAGGTGCTAACTTTCCATACGGGTTTCCTAACATGTTTCATGGTAGCCATGGTCACGCCCATGGATACTATCACCAGCTCCGTCAAGGTCAGCAAGATTATTATCTGAAGCGGCTGCTTTTGTTTATTGGTTTTTGTGTTCTTCTTGCCCTAATCTGGCAATAGATGAAAGGGTCCATTAGGGCTTATATTGCTTCGTGGTGTTTAGTGTATTCAACCTCTAATGTAAGAATTGAAAGGGGGAAAAAAACAACTGGTACATGGTCAAAAAAAAAAAAAAAAAAAAAAAAGAATCTGCTGGTACATTGTCTTGATATCTCATCATTCGTCCTGATTAGTCTTACTGTATGTTGAATGGACACCAACTTTCTATGCTTAGGCATGGTGAACATCAGCTGACATGCTTATGCAATTGTATTTGGAAGTTTCCATTTATGCATATATATAATACACACACATTTATTTGCTGACCA 1173 42.37 MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANFPYGFPNMFHGSHGHAHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIWQ 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6667926 6669424 + XM_039028095.1 Bhi04g00282 31891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00282 230 SUPERFAMILY RING/U-box 26 83 - -
Bhi04g00282 230 MobiDBLite consensus disorder prediction 1 20 - -
Bhi04g00282 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 230 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bhi04g00282 230 CDD RING-HC_AtRMA_like 28 72 - -
Bhi04g00282 230 MobiDBLite consensus disorder prediction 84 122 - -
Bhi04g00282 230 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Bhi04g00282 230 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
Bhi04g00282 230 Pfam Zinc finger, C3HC4 type (RING finger) 29 70 - -
Bhi04g00282 230 SMART ring_2 30 70 IPR001841 -
Bhi04g00282 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 84 IPR013083 -
Bhi04g00282 230 PANTHER OS12G0636000 PROTEIN 2 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00282 Bhi-Chr4:6667926 Bhi05g01871 Bhi-Chr5:58791094 3.84E-33 dispersed
Bhi11g01428 Bhi-Chr11:41410293 Bhi04g00282 Bhi-Chr4:6667926 1.13E-22 transposed
Bhi03g01959 Bhi-Chr3:41436736 Bhi04g00282 Bhi-Chr4:6667926 8.03E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00282 K10666 - csv:101221027 426.017