Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00293 CAAGCATCATTGACAAAGCTCTTACCCAAATTTCACTCATTAAATTAAGAAAAAAAATACAATTAAGGGATAATACAGCCAACTGTTTTGTTAATCTTTCCCTCTTGCTTCAACTCCACACTCTCAAATGCCAACAAAATTCATCTCTTTCCCACAAAATCTAATCCAAACATCAAAATTTTCTTCATCTCCTAAACTTTCCCATCTATGATCTCAAAAACCCAATTTCTAATTTCTACTAATCTTTTTTTTCTTGTTCTAATTTCAACACTCGAAACAGAGGCTAAATGTTCAAAATCTTGCAATTCCAAACAGACCCCTTACGATTTCCCCTACCCATTTGGCTTCTCCGCCGGCTGCCCAATCCGTCTGAACTGCAGCCACGACGGCGCCGCCATGATCGGAGAATTTCCTGTTGAATTTATCAACTCCGATCACATTAAAGTCGTAATCAAAGCTAAATGCAACCGCCGGTTCCACACAATTCGCCAATTCTTTAGCCCCCATTACGCTCCAACGGCCAATAACGCCCTTCTTTTACAGAACTGTTCGTCTCCGATTTCGACTTGCTTTTTACCGACGACGATGGTTCAGACCAAATTTGAATCCCCCAATTGCTCTGTGGATCGCTCTAGTATAAGCTGCTATACCCAAAACGCCACCGCTTCCGCTGGTTTCTTGAACTTCAAAAACCTCACCGGAACCCACTGCGATTATCTTCTGTCGTCGATTTCCGCGGAGGAGCTCAACAGCAACATCTCCGCCGTAATTTCTCTGGAAATTCAAACGGTGGATCTCGGGTGGTGGCTGCAGGGGGGCTGCCACCGCTCCTGCCATGAAGATGCTAACTGTACGGAGCTTAAATCGCCGAGTAATGGGACTGTCTCTTATACACATCTAGATGTGTATAAGNNAGACAGGTATTTGGCCGGCACCGGCTGCCGGAAAGCTTCAAATTGCTACACCACCAAGTACGTTATCGGCGAATGCGGAACATCAACAACAGCCACAAGAACCGCCATCCTCATCGGAACCGTGATCGGCGGAGCCGCCGTACTACTTTCTCTCGGTTTATTCTGCTGCTTTATCCGCCGTCGTTCCAATCTCAAATCTATACACCTCAACAAAATCACCAAACGCCGCCTCTCGGAAGCCACCGCTGGCGCCGGAAAATCCACTATCCACCTCTACACCTACAAAGAGATCCAAAAAGCCACCCACAACTTCTCCGACGATCACCGCCTCGGTACCGGCGCATACGCCACCGTCTACGCCGCAAAATTACGCAACGGCGAATGGGTCGCAATCAAACGCCTTAAAAATCGAGACCCCGACACCATTCAACAAGTTCTTAACGAAATCAATCTCATCTCCTCCGTCAGCCACCCTAACCTCGTTCGTCTCCTCGGCTGCTCCATGGAATCCGGCGACCAAATCCTCGTCTACGAATTCATGCCCAACGGCACTCTGTCTCAACATTTACAGAAACAGAGAGGCACCGGCCTCCCCTGGCTCGTCCGCCTCAACATCGCCGTCGAAACCGCTAACGCAATTGCCCATCTACATTCTGCAATTAACCCTCCGATCTTCCACAGAGACATCAAATCCAGCAACATACTACTCGATCAGAATCTCAAATCGAAAGTAGCGGATTTCGGGCTTTCAAGATTGGGTATGGCCGAAATTTCCCATATCTCGACAGCTCCTCAAGGGACACCGGGGTATCTCGATCCGCAATACCATCAAGATTTTCATCTCTCCGACAAGAGCGACGTGTACAGCTTCGGCGTGGTCCTTGTGGAATTGATCACCGCCATGAAAGTGGTGGATTTCTGCCGGCCGAAAGACGAGGTAAATTTGGCTACGCTGGCCGCCGATCGAATTGGGAATGGGCGGCTGAGTGAAATTGTGGACCCATTGATGGAGATGGAGGGAGATGAATGGGGGATTTCGTCGGTGGAGAAGGTGGGGGAGGTGGCGTTCAGATGCTTGGCGTTTCAAAGGGATGTGAGGCCGTCAATGGTGGAGGTAGCGGCGGAGCTGGAGGAGATCCGACGGAGCAAGTGGGAAGAAGGGGGATTGAAGTGTAAGGAAATGGAATTAGTAGTTGAAATTGGGAGCTCAAAATCTAGCCATGGAGGAGGGGATTACTTTTCAAGAGGCTCTGTTGAAGATTCATGGCGGAGTGAACAGAGCTCGCCGTCATCCAGTAGTTTGCTAAATAATGTCCTTTTGTGATGATCCCAATTTTGATTTTTTTTTCCATTTGGGGTGACTTTTTTTTTTTGTGTATTTTTCAAAAGGGAAAAATAAATTTGAAGTTAATGTACTTTGTTAAGAAATGATTTAATCAAAATTAAACTCCTAAAATTGGTAACGATGTTCCATC 2389 47.09 MISKTQFLISTNLFFLVLISTLETEAKCSKSCNSKQTPYDFPYPFGFSAGCPIRLNCSHDGAAMIGEFPVEFINSDHIKVVIKAKCNRRFHTIRQFFSPHYAPTANNALLLQNCSSPISTCFLPTTMVQTKFESPNCSVDRSSISCYTQNATASAGFLNFKNLTGTHCDYLLSSISAEELNSNISAVISLEIQTVDLGWWLQGGCHRSCHEDANCTELKSPSNGTVSYTHLDVYKXDRYLAGTGCRKASNCYTTKYVIGECGTSTTATRTAILIGTVIGGAAVLLSLGLFCCFIRRRSNLKSIHLNKITKRRLSEATAGAGKSTIHLYTYKEIQKATHNFSDDHRLGTGAYATVYAAKLRNGEWVAIKRLKNRDPDTIQQVLNEINLISSVSHPNLVRLLGCSMESGDQILVYEFMPNGTLSQHLQKQRGTGLPWLVRLNIAVETANAIAHLHSAINPPIFHRDIKSSNILLDQNLKSKVADFGLSRLGMAEISHISTAPQGTPGYLDPQYHQDFHLSDKSDVYSFGVVLVELITAMKVVDFCRPKDEVNLATLAADRIGNGRLSEIVDPLMEMEGDEWGISSVEKVGEVAFRCLAFQRDVRPSMVEVAAELEEIRRSKWEEGGLKCKEMELVVEIGSSKSSHGGGDYFSRGSVEDSWRSEQSSPSSSSLLNNVLL 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6777784 6796694 - XM_039028052.1 Bhi04g00293 31902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00293 676 SUPERFAMILY Protein kinase-like (PK-like) 322 613 IPR011009 -
Bhi04g00293 676 Gene3D Transferase(Phosphotransferase) domain 1 416 636 - -
Bhi04g00293 676 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 24 626 IPR045274 GO:0007166
Bhi04g00293 676 MobiDBLite consensus disorder prediction 638 672 - -
Bhi04g00293 676 ProSiteProfiles Protein kinase domain profile. 340 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi04g00293 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Bhi04g00293 676 CDD STKc_IRAK 346 615 - -
Bhi04g00293 676 SMART serkin_6 340 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi04g00293 676 Gene3D Phosphorylase Kinase; domain 1 310 415 - -
Bhi04g00293 676 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 14 24 626 - -
Bhi04g00293 676 MobiDBLite consensus disorder prediction 655 672 - -
Bhi04g00293 676 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Bhi04g00293 676 Pfam Protein kinase domain 341 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00293 - - - csv:101218893 1200.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g01925 Bhi-Chr3:40828188 Bhi04g00293 Bhi-Chr4:6777784 0 dispersed
Bhi03g01926 Bhi-Chr3:40828504 Bhi04g00293 Bhi-Chr4:6777784 0 dispersed
Bhi04g00293 Bhi-Chr4:6777784 Bhi08g02216 Bhi-Chr8:63123959 2.22E-93 dispersed
Bhi03g01924 Bhi-Chr3:40828188 Bhi04g00293 Bhi-Chr4:6777784 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g862 . . . . . . . . Cmo05g00222 Cmo12g00445 . . . Car12g00472 . . Cpe07g00450 Bhi04g00293 . . . . . Lcy13g2018 Cla08g01525 . . . . . . Cone4ag1879 Cone7ag1788 Cone17ag1312 . . . . Cme03g01991 . Blo18g00827 . Bda01g01485 Bpe02g01680 . Bma01g00774 . . . . Cma12g00502 Cma05g00216 Car05g00176 . Cpe11g00178 . . . . . . . . . . . . . . . Lsi08g01427 Csa02g02013 Chy03g01496 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001068 3 4 2 2 3 2 4 2 2 2 2 2 4 2 1 4 2 6 4 2 2 2 1 2 1 2 2 2 2 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87652 PF00069 Pkinase 1.00E-40 CL0016 Bhi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00293 Bhi_Chr04 FPKM 6.988006 8.214927 68.081497 71.779053 208.083939 236.48526 208.732986 1.188851 0.900964 0.477953