Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00295 TTTTTACCCTTCATTTTCCTCTTAATTTCAATTTCTGAAATTTTTTCGTTCACATTCCCCAAATTTTACGACTATGAAACTTGGGAATTTCTTGAAGGATAATTCCGATATTAAAATCGACGACGACGGCTATTTCCCGACGCCGAACAGCGACGAGTCTCCGCCGAGATTTTCGCCGTGGAATCAAACTTATCCGTTTCTGAAATCTCCCTGTTTTTCCGAATTCCAAAACGGCGTCGTTCTTCACCGGAATAATAATATTAATAATAATAATAATAATAATACTCTCATTGGGTCTCTTGTTCGTGAGGAAGGCCACGTGTACTCGCTAGCCACCGCCGGCGAGCTGCTCTACACCGGCTCCGACAGTAAAAACATTCGGGTATGGAAAAATTTGAAGGAATTTACTGGGTTTAAATCGAGCAGTGGATTGGTTAAGGCGATTATAATCTCCGGCGAAAAGATCTTCACCGGTCACCAGGACGGCAAAATTCGGGTCTGGAAAGTGGGTGCGAAAAACCCAAGCGGCGGTCACCGGCGGGCTGGGACGTTGCCGGCAATGAGAGATGTAGTAAGAAGCTCGATGAACCCACAAAACTACGTCGTTGTGGGACGGAACCGGAGCCGGCTTTGGTTTAAGCATGCGGATGCGGTTTCGTGCTTGTGCTTGAGTGAAGATAGGACTTTGTTGTATTCCTCTTCCTGGGATAAAACTTTGAAAGTATGGAGAATTTCAGATTCCAAGTGCCTCGAATCACTTATTGTTCACGACGATGCTGTCAATGCCGTCGTCGCAGCTTCCGATGGCTTGGTCATTACTGGCTCGGCCGATGGCACCGCTAAGGTATGGCGGAGACAGCATGAAGAAGACAACGATGCAACAAAACACATACTAGAGCAAACGCTGCTCAAGCAAGACAGTGCAGTGACGGCGGTAGCCGTCAACGCCGCCGGCACGGTGGTGTACTGTGGATCCTCCGATGGGCTTGTCAACTTCTGGGAGCGAGAAAAGTGGTTGACTTACGGTGGAGCCCTTAAGGGACACAACCTAGCAGTTCTCTGCCTTGCGGCAGCCGGAAACTGCATGGTACTCAGCGGCGCTGCCGATAAAACCATATGCGTGTGGCGGAGGGATGGGATTTTCCACACGTGCGTATCGGTTCTGACGGGTCATACTGGACCCGTTAAGTGTTTGGCTGTCGAGGAAGATCGTCGCTACCCGTCTAAACACGGCGGTCGGCGTTGGATTGCATACAGCGGTAGCCTGGACAGATCGGTGAAGGTGTGGGGAGTTTCCGACGGCCTCGGTGGCTGACGATTGGAATGTGTTGCGGTAGTCGGCGATCGAAAATAGGGAACAAATGAGAAGGTGCCACGTGGATGAAATCATATCATGATTTGTATAGTTTGCATGTAGGTGATGTTGTGACAGGTGGGGAAAATTCATGATTTTGGAATGAAGATTAGTGAGAATATTTTGTTGTACAA 1488 48.66 MKLGNFLKDNSDIKIDDDGYFPTPNSDESPPRFSPWNQTYPFLKSPCFSEFQNGVVLHRNNNINNNNNNNTLIGSLVREEGHVYSLATAGELLYTGSDSKNIRVWKNLKEFTGFKSSSGLVKAIIISGEKIFTGHQDGKIRVWKVGAKNPSGGHRRAGTLPAMRDVVRSSMNPQNYVVVGRNRSRLWFKHADAVSCLCLSEDRTLLYSSSWDKTLKVWRISDSKCLESLIVHDDAVNAVVAASDGLVITGSADGTAKVWRRQHEEDNDATKHILEQTLLKQDSAVTAVAVNAAGTVVYCGSSDGLVNFWEREKWLTYGGALKGHNLAVLCLAAAGNCMVLSGAADKTICVWRRDGIFHTCVSVLTGHTGPVKCLAVEEDRRYPSKHGGRRWIAYSGSLDRSVKVWGVSDGLGG 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6859212 6861464 + XM_039029899.1 Bhi04g00295 31904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00295 413 PANTHER PROTEIN JINGUBANG 25 409 - -
Bhi04g00295 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 310 IPR001680 GO:0005515
Bhi04g00295 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 321 351 IPR001680 GO:0005515
Bhi04g00295 413 Gene3D - 62 184 IPR015943 GO:0005515
Bhi04g00295 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 259 IPR001680 GO:0005515
Bhi04g00295 413 SUPERFAMILY WD40 repeat-like 69 409 IPR036322 GO:0005515
Bhi04g00295 413 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 25 409 IPR045182 -
Bhi04g00295 413 Pfam WD domain, G-beta repeat 321 351 IPR001680 GO:0005515
Bhi04g00295 413 Pfam WD domain, G-beta repeat 105 144 IPR001680 GO:0005515
Bhi04g00295 413 Pfam WD domain, G-beta repeat 224 259 IPR001680 GO:0005515
Bhi04g00295 413 Pfam WD domain, G-beta repeat 359 405 IPR001680 GO:0005515
Bhi04g00295 413 Pfam WD domain, G-beta repeat 190 218 IPR001680 GO:0005515
Bhi04g00295 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Bhi04g00295 413 SMART WD40_4 69 106 IPR001680 GO:0005515
Bhi04g00295 413 SMART WD40_4 271 310 IPR001680 GO:0005515
Bhi04g00295 413 SMART WD40_4 181 219 IPR001680 GO:0005515
Bhi04g00295 413 SMART WD40_4 222 260 IPR001680 GO:0005515
Bhi04g00295 413 SMART WD40_4 357 406 IPR001680 GO:0005515
Bhi04g00295 413 SMART WD40_4 107 144 IPR001680 GO:0005515
Bhi04g00295 413 SMART WD40_4 314 352 IPR001680 GO:0005515
Bhi04g00295 413 Gene3D - 276 411 IPR015943 GO:0005515
Bhi04g00295 413 Gene3D - 185 275 IPR015943 GO:0005515
Bhi04g00295 413 PRINTS G protein beta WD-40 repeat signature 131 145 IPR020472 -
Bhi04g00295 413 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Bhi04g00295 413 PRINTS G protein beta WD-40 repeat signature 247 261 IPR020472 -
Bhi04g00295 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00295 - - - csv:101222126 746.503
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00295 Bhi-Chr4:6859212 Bhi11g02555 Bhi-Chr11:69496361 0 dispersed
Bhi04g00295 Bhi-Chr4:6859212 Bhi07g01834 Bhi-Chr7:49745524 9.61E-67 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g860 Blo01g01543 Blo12g00920 Bda01g00554 Bda03g00243 Bpe02g00412 . Bma04g00193 . Cmo05g00221 Cmo12g00448 . Cma09g00180 . . Sed10g2068 . . Bhi04g00295 Tan02g0857 Cmetu01g0434 . Hepe02g0551 . . Cla08g01527 Cam08g2019 Cec08g1593 Cco08g1730 Clacu08g1708 . Cre08g1489 . . . . . Csa03g04173 Chy04g00544 . Blo17g00826 . Bda08g01311 . . . . Bma05g00099 . Cmo01g01944 Cmo09g00176 Cma12g00505 Cma05g00214 . . . . . . . . . . . Cla05g01970 Cam05g2121 Cec05g2132 Cco05g2184 Clacu05g2109 Cmu05g1985 Cre05g2104 . Csa02g02011 Chy03g01498 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013246 2 1 1 1 1 1 0 1 1 1 1 1 2 0 1 2 1 0 0 1 1 1 1 1 0 0 1 2 1 0 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00295 Bhi_Chr04 FPKM 14.349835 16.575161 9.070895 9.485297 17.816099 15.624362 16.303221 3.846152 3.519122 3.641123