Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00370 ATGCAAGGGCAAAGGAGTAGTGTTGGTTCTTTGTCAGAAACAATAAACTTTGAACATGGATCTTCATCAAATAATCCGGGTAACCAACCAGTTTACTGGAATAACATGTGGAATCCAGCAGAAAACCGAATACAAGATTATTTATTACCTACTTCTGATATAAATTCTGGATATGTAAGCTCTGTGAGCCATGAACAACGAAGTTTGAGCAGATGGAGCTTGGGTGAACCTAGCTCTTGTGATATGCAAACTGAGGTGCTGCCTGACGAGCAGAAAGCTGAAATTGGATGGTCTTCACTGACTCGTGATGCAGATGGTCCTGTTACCGAAAATCGACTCTGTGAGTCATCAAATAATCCTTCACTGGGTCATGTGAATTTGAGCCCGCTGATTATACAAAATTCTAATTCTAATTCTAATGCGATTCCTCATAATCTCAACCTAAATGCAAGTTTTGCTAGTCATGGAGGTGACAATAGCAGAGTTAATGAAGGTACTAACGTGTATAAATCTAGTGGATCAGAAGAAGGGAGGATTTTATGTTCTAGTACATCTGATCCTCTTTTACTTCCTTCCGGAAATAGTGGACTTCCGGTGGTTGCAAATGACAGTAGAGCAGGCTCTTCCTTGGATGGTCGTCGTGCACCCTGCAAAAGAAAATCTATTGAAGGAAGTGTTGCGCAGTCCTCTTTAAGTGGAAGCAGTAACTACTCGCAGCATATTGAAAGTGGTTCTGAGCCCCATCTTCCAGTGTTCCCTGGTCGATACAACACAGGCAGTAGGTTAAGCATACCTCCTGCACCAGCACGAATGAATCAGGCACCTGTACGAGGTGCAGGTGAACTGACTTCCAACAACTTCTCTGAGTCGATTGTTGCGGAAAGCTCAGACAGTTCTCAGAGAAACTATCGTATAAGGATTAGTTCATCAAATGCACAAGATTCTTTTGCATCAGCAGGCACTGCTGTTAGGCATCCTGGGCCGCCATCTTCCCAGCTGCCAGCAAGACTTCTACCTACTGAGCATGTATTAGACTTGAGGCCAGCCCCAGCTGTAGACAATGTATCAGCTCAAGGTCAGCCAATTATGATACACGTGCCTGCTTTACCTCGAAGTCTGCAACCATATAGGTGGAATGGGAGCTCTACTTCAAGAAGTGGCAGTTCATCAACTTCTACAGGAGAGAGGCAGGTGGTGCAACGTGAAGAGGTGAGACCAAGCAACATGGGAAGAAATGTATCCGAACATCCTATGTTTGTCCCAGCAAATGAGCTGAGGAATTTGGTTCGAAATCCATCAAATAGAGGTTTAGCATCTTCAAACCTGGCCATTCCTGGAAATGTTGCTTCTACATCCAGGATTGGTTCAAGTTCAGGGGTCCATCCCTCTTCTGGACCTTGGATTCCTCCTGAGAGTTCTCCAACACAGTTTCCCAGGAGGTTAACAGAATATGTTCGTAGGCAGCTATTTGCTTCTGCTACAAATGAATCTGGAGGAAGGACAAGTAATTATTCACAGCGATCAGGTTCTACTTCTGCCCAGGATATGGTTCTTTCATCTGGATCTGGCCGCCGGGGGCACCATTTATTGCAACCAAGGTCTGCGTTATGGATGGAAAGAAGAGGTGACGGTGGACTTGGTCTTCCCTATTCATTACGAACTTTGGCAACTTCTGGTGAAGGAAGCGACAATAATAGACTTGTATCTGAGCACATTCGCAATGTCTTGGGGCTTGTTCGCAGGGGTGAAAGCTTACGGGTTGAGGATGTGATGATCCTGGACCAGTCACTATTTTTTGGGATGGCTGATATTTATGATAGGCACAGGGATATGCGTCTCGATGTTGATAACATGTCATATGAGGAATTGTTGGCTTTGGAAGAGCGTATTGGGAATGTCAACACAGGACTAAATGAAGAGACGATTGTTGCACGACTGAAACAAAAGAAGCATGTGAATGCTGTTGACTCACAGGTGGAGGAAGAACCATGCTGTGTTTGTCAGGAGGAATACGTCGAAGGAGAAGACATCGGAACATTGGAATGCGGGCACGACTTCCACACAGCTTGTATTAAGCAGTGGCTGATGCAAAAGAATCTGTGTCCCATATGCAAAACAACTGGTTTAGCAAGCCGAGAATGAGCCTTTGGTGGTGGTTGCTGTTGCTTAAAAAGGAGTTAAAAAAAGCAAGCAACTGTGAGACGGGGGACGAAATGCTATGATGTTGCTTGCCAATTCTCTACCTCTGAAGACCCACATTTAAGTTTCTCTATATACATTACTACAAGTAGTAAAATTTTTATATAATGCAAGCAATCATTTTTTTTAATTTGTTTTGGAAGGAAAAAAAAAAAAGAAGAAAAATTCAAGGGTTGTAATTGGCAAGGAATTTGTTAGCTTTAAGGTTATGATGACGGTCGGTCAAACTAATTAATGTTTACTCTCATTGACATTAGAGATTGTTGGTCTTAATATATCATCGGATTTTTCCATA 2494 43.1 MQGQRSSVGSLSETINFEHGSSSNNPGNQPVYWNNMWNPAENRIQDYLLPTSDINSGYVSSVSHEQRSLSRWSLGEPSSCDMQTEVLPDEQKAEIGWSSLTRDADGPVTENRLCESSNNPSLGHVNLSPLIIQNSNSNSNAIPHNLNLNASFASHGGDNSRVNEGTNVYKSSGSEEGRILCSSTSDPLLLPSGNSGLPVVANDSRAGSSLDGRRAPCKRKSIEGSVAQSSLSGSSNYSQHIESGSEPHLPVFPGRYNTGSRLSIPPAPARMNQAPVRGAGELTSNNFSESIVAESSDSSQRNYRIRISSSNAQDSFASAGTAVRHPGPPSSQLPARLLPTEHVLDLRPAPAVDNVSAQGQPIMIHVPALPRSLQPYRWNGSSTSRSGSSSTSTGERQVVQREEVRPSNMGRNVSEHPMFVPANELRNLVRNPSNRGLASSNLAIPGNVASTSRIGSSSGVHPSSGPWIPPESSPTQFPRRLTEYVRRQLFASATNESGGRTSNYSQRSGSTSAQDMVLSSGSGRRGHHLLQPRSALWMERRGDGGLGLPYSLRTLATSGEGSDNNRLVSEHIRNVLGLVRRGESLRVEDVMILDQSLFFGMADIYDRHRDMRLDVDNMSYEELLALEERIGNVNTGLNEETIVARLKQKKHVNAVDSQVEEEPCCVCQEEYVEGEDIGTLECGHDFHTACIKQWLMQKNLCPICKTTGLASRE 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9098550 9102680 - XM_039029539.1 Bhi04g00370 31979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00370 713 MobiDBLite consensus disorder prediction 1 30 - -
Bhi04g00370 713 MobiDBLite consensus disorder prediction 491 527 - -
Bhi04g00370 713 CDD RING-H2_TTC3 663 705 - -
Bhi04g00370 713 MobiDBLite consensus disorder prediction 156 266 - -
Bhi04g00370 713 MobiDBLite consensus disorder prediction 156 202 - -
Bhi04g00370 713 Pfam Ring finger domain 664 705 IPR001841 -
Bhi04g00370 713 MobiDBLite consensus disorder prediction 375 397 - -
Bhi04g00370 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 628 708 IPR013083 -
Bhi04g00370 713 SMART ring_2 664 704 IPR001841 -
Bhi04g00370 713 ProSiteProfiles Zinc finger RING-type profile. 664 705 IPR001841 -
Bhi04g00370 713 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 710 - -
Bhi04g00370 713 MobiDBLite consensus disorder prediction 450 477 - -
Bhi04g00370 713 MobiDBLite consensus disorder prediction 373 415 - -
Bhi04g00370 713 MobiDBLite consensus disorder prediction 491 519 - -
Bhi04g00370 713 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 710 IPR045191 GO:0061630
Bhi04g00370 713 MobiDBLite consensus disorder prediction 223 243 - -
Bhi04g00370 713 SUPERFAMILY RING/U-box 658 707 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00370 - - - csv:101203243 1310.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00370 Bhi-Chr4:9098550 Bhi04g00372 Bhi-Chr4:9098902 0 dispersed
Bhi08g01261 Bhi-Chr8:38945911 Bhi04g00370 Bhi-Chr4:9098550 7.32E-34 dispersed
Bhi08g01262 Bhi-Chr8:38945911 Bhi04g00370 Bhi-Chr4:9098550 1.70E-33 dispersed
Bhi09g03477 Bhi-Chr9:87838637 Bhi04g00370 Bhi-Chr4:9098550 1.68E-30 dispersed
Bhi09g03478 Bhi-Chr9:87838762 Bhi04g00370 Bhi-Chr4:9098550 2.74E-30 dispersed
Bhi04g00370 Bhi-Chr4:9098550 Bhi04g00371 Bhi-Chr4:9098902 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g743 . . . . . . . . Cmo05g00171 . . . . . Sed11g0938 . . Bhi04g00370 Tan02g1797 . . . . . Cla08g01584 Cam08g2081 Cec08g1664 Cco08g1793 Clacu08g1767 . Cre08g1552 Cone4ag1588 Cone7ag1361 Cone17ag0852 Cone20ag0198 . . . . . . . . . Bpe05g00370 . . . . . . Cma05g00173 Car05g00146 . Cpe11g00142 . . . . . . . . . . . . . . . Lsi08g01487 Csa02g01933 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002893 2 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 9 6 2 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00370 Bhi_Chr04 FPKM 40.977081 47.413235 24.150494 23.598644 19.930601 16.842621 16.023851 30.179398 29.57905 32.168354