Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00375 TTTGGGTCTATGAGGTGTGAAAATCTTTGTGTGTTGTGTGTATATAATAAGAGGTGGTGGGTTTGATCCGATTCTTGACCATGGTATTAAGTATGAAGGTTCATCAGTTTGCACGTGGATTTTGGGACGAGCCCTCCCTCTCCCTTGGCTGCAAACGCTTACGCCCTCTTGCCCCTAAACTTCAACATCAAAACCATCAACCCACCTCCGATAACACCACCGTCACCACCACTACCACCACCACGCTCACCTCTTTCGACCTCAAGACCTTCATCAAACCCGATTGCGGCCCCCGAAAACTCGGTTCCTCCCATGATCATAATAAAGATTCTTCCTCCTCCTCTTCTTCCCTCCAGACAGGAGTTGAAACTCATCCAGGAGGGACACGGTGGAATCCAACCCAAGAACAGATAGGGATATTGGAGATGCTTTATAGTAGAGGAATGAGGACTCCCAATGCCCAGCAAATTGAACACATCACTGCCCAGCTTGGCAACTACGGCAAGATCGAAGGCAAGAATGTTTTTTATTGGTTTCAAAATCATAAAGCCCGTGAGCGACAAAAACAAAAACGCAACAGTCTTGGTCTTCCACACTCTCCCAGAACTCCTCCCCCTCCTCCCATCATCCCGGCCTTCCACACGGGAGAAGAAGATAGTCCGTACAAGAGGAAGTGCTTGTATTGGGGGTTTGAGTGTTTGGTAGAAGATAATGGTATAATGTGTAAAAAGGAGGATGGTGATCATGATAGGACTCTGGAGTTATTCCCCTTGCATCCAGAACGTTGATGATCCAATTTTTGGAAATTTTAAAAAGAAAAATGCGTCTTATGCTATGATCATAAGTTGTTATGAATTAATCCGCTTTAAATTTCCTCTCTTTTCTCTCATTTCGAGAAAGAAAGAAAGGAAAAAGAAAAGTTCGAACAACAACTAGTACTATTCTATACTCATGTATGACGTACTTCCAATTTCCTCTCTTTTA 984 43.8 MVLSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQHQNHQPTSDNTTVTTTTTTTLTSFDLKTFIKPDCGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPAFHTGEEDSPYKRKCLYWGFECLVEDNGIMCKKEDGDHDRTLELFPLHPER 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9164651 9165804 - XM_039029745.1 Bhi04g00375 31984

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00375 235 CDD homeodomain 102 163 IPR001356 GO:0003677
Bhi04g00375 235 SUPERFAMILY Homeodomain-like 98 168 IPR009057 -
Bhi04g00375 235 MobiDBLite consensus disorder prediction 159 189 - -
Bhi04g00375 235 Gene3D - 101 168 - -
Bhi04g00375 235 ProSiteProfiles 'Homeobox' domain profile. 97 162 IPR001356 GO:0003677
Bhi04g00375 235 SMART HOX_1 99 166 IPR001356 GO:0003677
Bhi04g00375 235 MobiDBLite consensus disorder prediction 70 108 - -
Bhi04g00375 235 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 234 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Bhi04g00375 235 Pfam Homeodomain 102 161 IPR001356 GO:0003677
Bhi04g00375 235 MobiDBLite consensus disorder prediction 81 108 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00375 - - - csv:101204222 404.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00375 Bhi-Chr4:9164651 Bhi08g01290 Bhi-Chr8:39357629 4.59E-28 dispersed
Bhi04g00375 Bhi-Chr4:9164651 Bhi02g00135 Bhi-Chr2:2560364 4.16E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g735 . . . . . . . . Cmo05g00169 Cmo12g00505 . . . Car12g00518 Sed11g0934 . Cpe07g00494 Bhi04g00375 Tan02g1791 Cmetu12g0458 . Hepe08g1298 . Lcy13g2095 Cla08g01585 Cam08g2084 Cec08g1665 Cco08g1796 Clacu08g1770 . Cre08g1554 . . Cone17ag0854 Cone20ag0200 . . . Cme03g02065 . . . . . Bpe05g00030 Bma01g00657 Bma05g00042 . . . Cma12g00562 Cma05g00171 Car05g00145 . Cpe11g00141 . . . . . . . . . . . . . . . Lsi08g01489 Csa02g01931 Chy03g01558 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi08g01290 CCT,ECH 1 198 Wox Gene Family AT3G18010 54.3 5.2e-47 186.0
Bhi02g00135 CCT,ECH 1 165 Wox Gene Family AT3G18010 54.4 4.2e-41 166.4
Bhi11g02705 . 18 242 Wox Gene Family AT3G03660 52.6 5.5e-50 195.7
Bhi11g00265 . 1 275 Wox Gene Family AT4G35550 50.3 7.4e-70 261.5
Bhi11g00264 . 1 276 Wox Gene Family AT4G35550 50.2 9.7e-70 261.2
Bhi11g00266 . 1 276 Wox Gene Family AT4G35550 50.2 9.7e-70 261.2
Bhi09g02871 . 101 290 Wox Gene Family AT4G35550 57.4 1.1e-57 221.1
Bhi04g00375 . 5 168 Wox Gene Family AT1G46480 62.2 1.0e-49 194.1
Bhi03g00342 . 1 388 Wox Gene Family AT2G33880 50.1 2.5e-66 250.4
Bhi08g01290 CCT,ECH 1 198 Wox Gene Family AT3G18010 54.3 5.2e-47 186.0
Bhi02g00135 CCT,ECH 1 165 Wox Gene Family AT3G18010 54.4 4.2e-41 166.4
Bhi04g00375 . 5 168 Wox Gene Family AT1G46480 62.2 1.0e-49 194.1
Bhi03g00342 . 1 388 Wox Gene Family AT2G33880 50.1 2.5e-66 250.4
Bhi11g02705 . 18 242 Wox Gene Family AT3G03660 52.6 5.5e-50 195.7
Bhi11g00265 . 1 275 Wox Gene Family AT4G35550 50.3 7.4e-70 261.5
Bhi11g00264 . 1 276 Wox Gene Family AT4G35550 50.2 9.7e-70 261.2
Bhi11g00266 . 1 276 Wox Gene Family AT4G35550 50.2 9.7e-70 261.2
Bhi09g02871 . 101 290 Wox Gene Family AT4G35550 57.4 1.1e-57 221.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005110 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
863 PF00046 Homeodomain 1.00E-18 CL0123 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00375 Bhi_Chr04 FPKM 61.904743 68.387459 123.201263 126.568634 111.846474 108.156464 110.745903 82.091354 79.102051 80.326256