Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00409 GACCCCCAAATTTCTTCGAACCAAATTGCCCTCCAGAATTTATCAACAATTATTACAAATTTTTTCTCCTTATTTCGTTTTGGTTTCTAATTGAGATCAGAGCCGGCGATGAAAGCAGTCTTCAATCTCAGTTCTTCACTCTCTCTTTCGCCGTCACAGTCGCACTACAGGACCACCGCCGTCTTCACTCCTCGTCGACGGATCGCTTCTTCGTCAACAGCCGTCGGCGGCGCTTGCTCGTCGTGTCGTACACATTTGACTCTCTTTCCACAGCATCGATCTTCGTTTTCGCCTCTGCGATGCAATGTGAGGGAGACGGTGCCGGATCAAGAAATGGCGTCAACCGATGAACAAGACCCACGCATAGCCAAAATCTCCAAGGCCATTCGAGTTATCCCAGATTTTCCTAAACCAGGGATTTTGTTTCAGGACATTACAACTTTGCTTCTTGATACAAAGGCCTTCAAGGACGCTATCGATTTGTTCGTGGAGAGGTACAGAGGGAAGAATATCTCTGTCGTTGCTGGAATTGAGGCGAGGGGTTTCATTTTTGGCCCTCCGATAGCTCTGGCTATTGGTGCAAAATTTGTTCCCATGAGAAAACCCAAGAAGTTGCCTGGTGAAGTCATTTCAGAAGAGTACTCTTTAGAGTATGGAACCGATAAAATTGAGATGCATGTAGGAGCTGTTGAAGCTGGAGAACGTGCTCTTGTGATAGATGATCTCATTGCAACTGGGGGAACCTTGTGTGCAGCAATAAGGCTACTTGAGCGAGTTGGCGTTGAGGTGGTCGAGTGTGCATGTGTGATCGAGCTGGATGGACTAAAGGGCCGTGAACGATTGGGAGGCAAACCTCTATTCGTTCTAGTTAATGCAGTGGGATGATCGTAGCCTTTTTATGCATATGCCATGTTTGGAAATGATGATACTGAGATTGTATCACTGCTAAAAGTCGAAGTTTCAAAGTGTTACATAATTTTGAAGCGGAGAGTCTGGCTAGAAATAAAAGGGTTGGTATTAGTTTGAGAGTTGAAGAGATTAAACAATAGAAGAAAAAAAGGTCTGTAGGGACTGTATTAGCTTTTGATTATTCTGTGGTGGTAATGTATTTGTTCTGCTTTCTCATTTCTGCCTAGCTGTTGAAGATGGGAAGGAAAAAGAGAGATGGTTGAAGTTAATTTTGAATATTTGCAGAAACTTCTTTATTTTCCAGTTTATTAGTTTTTATATCCAATAAAAATGCCTACTACCCCCACATCCCAATGCAACATTA 1273 43.21 MKAVFNLSSSLSLSPSQSHYRTTAVFTPRRRIASSSTAVGGACSSCRTHLTLFPQHRSSFSPLRCNVRETVPDQEMASTDEQDPRIAKISKAIRVIPDFPKPGILFQDITTLLLDTKAFKDAIDLFVERYRGKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGTDKIEMHVGAVEAGERALVIDDLIATGGTLCAAIRLLERVGVEVVECACVIELDGLKGRERLGGKPLFVLVNAVG 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10528522 10531847 + XM_039030569.1 Bhi04g00409 32018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00409 258 Hamap Adenine phosphoribosyltransferase [apt]. 89 256 IPR005764 GO:0003999|GO:0005737|GO:0006168
Bhi04g00409 258 SUPERFAMILY PRTase-like 88 249 IPR029057 -
Bhi04g00409 258 Pfam Phosphoribosyl transferase domain 115 237 IPR000836 -
Bhi04g00409 258 TIGRFAM apt: adenine phosphoribosyltransferase 90 254 IPR005764 GO:0003999|GO:0005737|GO:0006168
Bhi04g00409 258 PANTHER BNAA09G27900D PROTEIN 80 256 - -
Bhi04g00409 258 Gene3D - 76 256 IPR029057 -
Bhi04g00409 258 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 80 256 - -
Bhi04g00409 258 CDD PRTases_typeI 122 253 IPR000836 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00409 K00759 APRT, apt; adenine phosphoribosyltransferase [EC:2.4.2.7] - csv:101208231 443.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00409 Bhi-Chr4:10528522 Bhi11g00216 Bhi-Chr11:5204217 1.15E-102 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g660 . . . . . . . . Cmo05g00147 Cmo12g00534 . . . Car12g00538 Sed10g1207 . . Bhi04g00409 Tan02g1743 Cmetu03g0036 . Hepe08g1328 . Lcy13g2129 Cla08g01616 Cam08g2118 Cec08g1703 Cco08g1826 Clacu08g1803 . Cre08g1585 . . . Cone20ag0230 . . . Cme03g02097 Blo17g00861 . . . . Bpe05g00045 . Bma05g00056 . . . Cma12g00594 Cma05g00145 Car05g00126 . . . . . . . . . . . . . . . . . Lsi08g01520 Csa02g01900 Chy03g01586 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00941 . 33 188 PRT Gene Family AT1G80050 79.5 3.9e-66 248.4
Bhi11g00216 . 30 180 PRT Gene Family AT1G80050 76.2 1.2e-62 236.9
Bhi12g00418 . 30 180 PRT Gene Family AT1G80050 74.8 1.3e-61 233.4
Bhi12g00417 . 30 183 PRT Gene Family AT1G80050 73.4 5.4e-60 228.0
Bhi04g00409 . 105 254 PRT Gene Family AT1G80050 72.0 5.6e-57 218.0
Bhi11g00215 . 30 148 PRT Gene Family AT1G80050 75.6 5.3e-47 184.9
Bhi04g00941 . 1 148 PRT Gene Family AT5G11160 80.4 5.5e-63 238.0
Bhi12g00418 . 8 145 PRT Gene Family AT5G11160 74.6 4.2e-55 211.8
Bhi04g00409 . 83 220 PRT Gene Family AT5G11160 72.5 1.4e-53 206.8
Bhi12g00417 . 8 148 PRT Gene Family AT5G11160 73.0 1.8e-53 206.5
Bhi11g00216 . 8 145 PRT Gene Family AT5G11160 71.7 5.7e-52 201.4
Bhi11g00215 . 8 145 PRT Gene Family AT5G11160 71.7 5.7e-52 201.4
Bhi04g00409 . 76 256 PRT Gene Family AT1G27450 82.3 2.4e-80 295.8
Bhi12g00418 . 7 180 PRT Gene Family AT1G27450 74.1 1.9e-72 269.6
Bhi11g00216 . 1 180 PRT Gene Family AT1G27450 72.2 1.6e-71 266.5
Bhi12g00417 . 7 183 PRT Gene Family AT1G27450 72.9 7.8e-71 264.2
Bhi04g00941 . 11 183 PRT Gene Family AT1G27450 69.4 2.0e-66 249.6
Bhi11g00215 . 1 146 PRT Gene Family AT1G27450 74.7 2.0e-58 223.0
Bhi10g01929 . 68 557 PRT Gene Family AT2G16570 84.8 5.8e-242 834.3
Bhi10g01929 . 64 557 PRT Gene Family AT4G34740 84.4 5.2e-243 837.8
Bhi10g01929 . 28 530 PRT Gene Family AT4G38880 70.8 8.9e-200 694.1
Bhi04g00409 . 76 256 PRT Gene Family AT1G27450 82.3 2.4e-80 295.8
Bhi12g00418 . 7 180 PRT Gene Family AT1G27450 74.1 1.9e-72 269.6
Bhi11g00216 . 1 180 PRT Gene Family AT1G27450 72.2 1.6e-71 266.5
Bhi12g00417 . 7 183 PRT Gene Family AT1G27450 72.9 7.8e-71 264.2
Bhi04g00941 . 11 183 PRT Gene Family AT1G27450 69.4 2.0e-66 249.6
Bhi11g00215 . 1 146 PRT Gene Family AT1G27450 74.7 2.0e-58 223.0
Bhi04g00941 . 33 188 PRT Gene Family AT1G80050 79.5 3.9e-66 248.4
Bhi11g00216 . 30 180 PRT Gene Family AT1G80050 76.2 1.2e-62 236.9
Bhi12g00418 . 30 180 PRT Gene Family AT1G80050 74.8 1.3e-61 233.4
Bhi12g00417 . 30 183 PRT Gene Family AT1G80050 73.4 5.4e-60 228.0
Bhi04g00409 . 105 254 PRT Gene Family AT1G80050 72.0 5.6e-57 218.0
Bhi11g00215 . 30 148 PRT Gene Family AT1G80050 75.6 5.3e-47 184.9
Bhi11g00216 . 5 97 PRT Gene Family AT4G22570 87.1 4.7e-44 174.5
Bhi11g00215 . 5 97 PRT Gene Family AT4G22570 87.1 4.7e-44 174.5
Bhi12g00418 . 6 104 PRT Gene Family AT4G22570 82.8 8.0e-44 173.7
Bhi12g00417 . 6 107 PRT Gene Family AT4G22570 80.4 3.4e-42 168.3
Bhi04g00409 . 80 172 PRT Gene Family AT4G22570 81.7 9.2e-40 160.2
Bhi04g00941 . 11 100 PRT Gene Family AT4G22570 78.9 3.3e-37 151.8
Bhi11g00216 . 1 96 PRT Gene Family AT4G12440 84.4 7.6e-41 163.7
Bhi11g00215 . 1 96 PRT Gene Family AT4G12440 84.4 7.6e-41 163.7
Bhi12g00418 . 1 96 PRT Gene Family AT4G12440 84.4 1.3e-40 162.9
Bhi12g00417 . 1 99 PRT Gene Family AT4G12440 81.8 5.4e-39 157.5
Bhi04g00409 . 76 171 PRT Gene Family AT4G12440 79.2 7.9e-38 153.7
Bhi04g00941 . 4 99 PRT Gene Family AT4G12440 78.1 5.1e-37 151.0
Bhi04g00941 . 1 148 PRT Gene Family AT5G11160 80.4 5.5e-63 238.0
Bhi12g00418 . 8 145 PRT Gene Family AT5G11160 74.6 4.2e-55 211.8
Bhi04g00409 . 83 220 PRT Gene Family AT5G11160 72.5 1.4e-53 206.8
Bhi12g00417 . 8 148 PRT Gene Family AT5G11160 73.0 1.8e-53 206.5
Bhi11g00216 . 8 145 PRT Gene Family AT5G11160 71.7 5.7e-52 201.4
Bhi11g00215 . 8 145 PRT Gene Family AT5G11160 71.7 5.7e-52 201.4
Bhi04g01588 . 1 186 PRT Gene Family AT1G71750 64.5 6.1e-69 258.1
Bhi09g01823 . 23 475 PRT Gene Family AT1G55810 85.5 4.0e-225 778.1
Bhi01g01902 . 19 482 PRT Gene Family AT1G55810 73.5 1.7e-199 693.0
Bhi09g01823 . 72 488 PRT Gene Family AT3G27440 74.9 1.6e-183 639.8
Bhi01g01902 . 80 482 PRT Gene Family AT3G27440 75.4 1.8e-179 626.3
Bhi01g01902 . 1 482 PRT Gene Family AT3G27190 86.1 3.9e-247 851.3
Bhi09g01823 . 11 474 PRT Gene Family AT3G27190 73.9 2.6e-206 715.7
Bhi03g02043 . 3 288 PRT Gene Family AT3G53900 67.7 6.4e-107 384.8
Bhi03g02042 . 3 293 PRT Gene Family AT3G53900 66.6 4.6e-105 378.6
Bhi03g02045 . 6 228 PRT Gene Family AT3G53900 77.6 1.3e-102 370.5
Bhi03g02044 . 6 233 PRT Gene Family AT3G53900 75.9 9.0e-101 364.4
Bhi09g01823 . 8 475 PRT Gene Family AT4G26510 83.9 1.9e-230 795.8
Bhi01g01902 . 11 482 PRT Gene Family AT4G26510 75.2 1.1e-209 726.9
Bhi01g01902 . 1 482 PRT Gene Family AT5G40870 86.7 2.3e-247 852.0
Bhi09g01823 . 10 477 PRT Gene Family AT5G40870 73.0 1.7e-205 713.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00409 Bhi_Chr04 FPKM 7.631915 9.852343 0.41803 0.609685 1.419917 0.0 1.087303 0.156194 0.0 0.238674