Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00460 CTTTATGCTCTGAAAGGTTCTTTCACTTTATGATGTTTGTTAGATTTTATGCTTCACATATTAGATTTCCTTTTGGTTCCATAAAGCTGCACATTTTACTTTTTCTTGTTTACTCCTTTCCATGAAATCACCACTTTTCAATTTTGGTCAAACTCCTTTTCATCTTCTCTTTTACACTTCTATGTATTTTACCTTCTCAAATTTCAGTCCTTTATTCTGTTTCTCTGACACACAAGTTTAGTATCCTAAGTTTTTACATTTGATTTGGCTGTCTAAATTGGGAAATGGGTGGTTCTATTTCTGGTTTTCAATGTGAAATAATGAAGTGTTCTTTTGAAGTTAGCAGTCCTCAGCCATTGATTGGAGCTGACACTTCCTTTTCATCTACTTTTGGATCTTCTGCAACACCTCCTCTATGTGAATTATCCACCTCTTTGGAGAATGAGGGAGTGCAAACCATATCCCATCTTCTTCACGATCCTTCTAGTTTGAGCTTTGATATGTTTGGAAGTGGGAACTTCTCAGAAATGGTGGGTTCTTTTGGCTTTCTAACTGAAGGTGACCACAGCCAGATCCCTAAGATTAAGTGTCCACTTAGTTATGTGTCAAATCTGGATGAAGGACAAACGATCTCACCAAAGAACGATGCGAAGGCTCGGCTCGATTGCGTTAATGAGAATCGAAGAAAATTGGTTCTTGGTTCCAATTCTTCCAGCCCAAATAAGAATGTTGAAGATTACTTTAATGTGGAGCCAACTAATATCCTTAATAAAAATGACAAAACTCTGAAAGTTGAGCATAGAATGAGTGCAAATTTTAACACCAAATCAGATAGTAAACAAGCCAAAGGAGGCTCTCAATGTGTACAAGCTCCCAAGGAGAATTATATTCGTGTTCAAGTACGACGAGTCCGAGCTACTAACCATAGCCTCGCAGAAAGGGTCAGGAGGGAAAAGATCAATGAACGAATGAAGTTGTTGCAAGAGCTTGTTCCTGGATGCAATCAGATTACCGGGAAAACTGTGGTGCTCGACACAATTATTAACTATGTACAATCACTGCAACAACAGGTTGAGTTTCTATCGATGAAACTCGCAAATGTCGGTCCAGAATCAAACTTGGATACAGAGAAGATTCTGCTCACAAATAACTCATACATTTCATCGCCGAATATTCTTCGTACACAAGATGAAGGCATAGACAACGTTCTTGCAATCGATCCTAGATTAACAACATCTCACACAACTCCTCATGTCATGTTTCATCTTCATGGAACAATGCCAACCATTCCAAAAACTACATCTCAGCAACTTTCAAGCCTTTTCAAGATGAGACGATAAGCAGTTCTTCAAATTTCAAGTAGATGATCACAATTATGCCGGTCCAAAAATCAGACATGGATGTGCACAATTATATGTTAGTATTTATCCTTTGTTGGTCACTACAAGGGCAGCAAATTTATTAAGACAGCAATGTAAAGTGGTACTCATTTGTTTGAATTCAAATGTTGTTCTTAATCCTACACATACTTTTCAATCAATCTTACTTTATCTTCTGAA 1559 37.52 MGGSISGFQCEIMKCSFEVSSPQPLIGADTSFSSTFGSSATPPLCELSTSLENEGVQTISHLLHDPSSLSFDMFGSGNFSEMVGSFGFLTEGDHSQIPKIKCPLSYVSNLDEGQTISPKNDAKARLDCVNENRRKLVLGSNSSSPNKNVEDYFNVEPTNILNKNDKTLKVEHRMSANFNTKSDSKQAKGGSQCVQAPKENYIRVQVRRVRATNHSLAERVRREKINERMKLLQELVPGCNQITGKTVVLDTIINYVQSLQQQVEFLSMKLANVGPESNLDTEKILLTNNSYISSPNILRTQDEGIDNVLAIDPRLTTSHTTPHVMFHLHGTMPTIPKTTSQQLSSLFKMRR 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11699679 11702102 + XM_039029697.1 Bhi04g00460 32069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00460 351 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 209 259 IPR011598 GO:0046983
Bhi04g00460 351 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 31 342 IPR024097 GO:0006355
Bhi04g00460 351 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 31 342 - -
Bhi04g00460 351 SMART finulus 215 265 IPR011598 GO:0046983
Bhi04g00460 351 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 273 IPR036638 GO:0046983
Bhi04g00460 351 Pfam Helix-loop-helix DNA-binding domain 211 260 IPR011598 GO:0046983
Bhi04g00460 351 Gene3D - 205 280 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00460 - - - bhj:120075945 686.797
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi04g00460 Bhi09g03191 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00457 Bhi-Chr4:11699472 Bhi04g00460 Bhi-Chr4:11699679 0 dispersed
Bhi04g00458 Bhi-Chr4:11699674 Bhi04g00460 Bhi-Chr4:11699679 0 dispersed
Bhi04g00460 Bhi-Chr4:11699679 Bhi09g03191 Bhi-Chr9:81814217 2.21E-56 dispersed
Bhi04g00459 Bhi-Chr4:11699677 Bhi04g00460 Bhi-Chr4:11699679 2.36E-91 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g606 Blo01g01485 . . . Bpe02g00466 . . Bma01g02229 . . . Cma09g00309 Car01g01375 . . Cpe06g00219 . Bhi04g00460 . . . . . . Cla08g01642 Cam08g2146 Cec08g1734 Cco08g1853 Clacu08g1834 . Cre08g1617 Cone4ag1634 . Cone17ag0902 Cone20ag0245 Lsi04g01455 Csa04g02505 . Cme03g02126 . . . . . . . . Sed11g1869 Cmo01g01823 . . . . Car09g00262 . Cpe02g00239 Bhi09g03191 Tan01g4661 Cmetu07g1171 . Hepe01g1851 Mch11g0386 . . . . . . . . Lsi08g01550 Csa02g01869 Chy07g00212 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014327 0 4 0 0 0 1 0 1 1 1 1 1 0 1 1 0 1 0 0 1 1 1 1 1 1 1 0 0 2 0 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
876 PF00010 HLH 2.80E-07 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00460 Bhi_Chr04 FPKM 11.239448 12.063853 11.494547 11.580542 15.12058 14.07167 15.33073 15.886901 17.169903 16.914972