Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00467 TATCAATAGCTCTATACAACCCTAAAATATTCCCTCTACTTCTCCTTCTCCCTCTCCCTATTATATATCTACCTAGATATTGTACACTACTTTGATCATACATGATGGCAATGTTGTCTACCAAAGCTAGCCATGATTCACATGGTCAAGATTCTTCCTACTTCTTCGGATGGCAAGAGTACGAGAAGAACCCTTATCACCCTACTCGAAATCCCACCGGAATTATCCAAATGGGTCTCGCCGAAAACAAGCTATGTTATGACCTATTGGATGAGTGGATGGAGAACAACCCAGATGCTTTGGGATTGAAAAGAAATGGAGTGTCTGTGTTTAGAGAATTGGCTCTATTTCAAGACTACCATGGCTTGCCTGCTTTTAAAAAGGTGTTAGTTGAATCGTTGGCGGAAATACGAGGAAACAAAGTGAAATTTGATGTGAATAAATTGGTTCTCACTGCTGGTGCAACTTCTGCAAATGAGATCCTAATGTTTTGTCTTGCCGAACCTGGTGAAGCTTTCCTTGTTCCCACTCCTTACTATCCTGGGTTTGACAGGGACCTAAAATGGCGAACAGGCGTACAAATAATTCCAATTCACTGTTCGAGTTCAAACGGTTTCCGAATCACAGCAGCGGCAATGGAGGAGGCCATGGAACAAGCCCAGAAGCTGAAATTAAGAGTGAAAGGGGTTTTAATAACGAACCCATCGAACCCGTTAGGCACCACATTGAGCCGGAACGAGCTGAATTTAGTAGTGGATTTCGCGACCGCCAAGGCAATCCACATCGTGAGCGACGAGATATATTCGGCCACAGTATTCTCGTCCCCAGATTTCCGAACCATCATGGACCAACGCCTACAAAAATCCCCAATTTGGGACCGAATCCACGTGGTGTACAGCCTATCCAAGGATCTAGGCCTACCTGGGTTCCGCGTAGGCATGATTTATTCAAACGACCCACAAGTAGTGGCTGCAGCTACCAAAATGTCTAGCTTCGGTTTAATTTCGTCTCAAACGCAATATTTGGTGTCACAAATTCTAGGGGACGCCAAATTCCGAGGGAATTACATGGAGGAAATGAAGACGAGGATCCTAAAGAGAAAAGCGATGCTGGAGTCGGGGCTCCGGAAAGCCGGAATCGGGTGTTTGAAAGGGAATGCGGGTCTGTTTTGTTGGGTGGATATGAGGCATCTTTTGAAGTACCCAAGTTTTGAAGAGGAAATGGAGCTTTGGAAGAGGATTTTGTGTGAGGTTGGGCTTAACGTCTCACCCGGTTCGGCTTGTCATTGCTCTGAACCCGGTTGGTTTAGAATGTGCTTTGCCAACATGTCGGAACACACTTTGACGGTGGCGATGTGTCGTCTTAAGGCCTTTGTGGACTCTACTGCCTCCTCCTCTCTCAAAGGCCAAAGAAGTCCGTTGTTGTTAATAGAAGGCCCTCAACTAAGTGGTAATGGTGTAGCCTAATATGCACAAAATTTCTTCTTTCGAAGCTGTTTGCTTGTTTATTACCCTAA 1516 45.18 MMAMLSTKASHDSHGQDSSYFFGWQEYEKNPYHPTRNPTGIIQMGLAENKLCYDLLDEWMENNPDALGLKRNGVSVFRELALFQDYHGLPAFKKVLVESLAEIRGNKVKFDVNKLVLTAGATSANEILMFCLAEPGEAFLVPTPYYPGFDRDLKWRTGVQIIPIHCSSSNGFRITAAAMEEAMEQAQKLKLRVKGVLITNPSNPLGTTLSRNELNLVVDFATAKAIHIVSDEIYSATVFSSPDFRTIMDQRLQKSPIWDRIHVVYSLSKDLGLPGFRVGMIYSNDPQVVAAATKMSSFGLISSQTQYLVSQILGDAKFRGNYMEEMKTRILKRKAMLESGLRKAGIGCLKGNAGLFCWVDMRHLLKYPSFEEEMELWKRILCEVGLNVSPGSACHCSEPGWFRMCFANMSEHTLTVAMCRLKAFVDSTASSSLKGQRSPLLLIEGPQLSGNGVA 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11944439 11946822 - XM_039030337.1 Bhi04g00467 32076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00467 454 SUPERFAMILY PLP-dependent transferases 4 425 IPR015424 -
Bhi04g00467 454 CDD AAT_like 78 423 - -
Bhi04g00467 454 Pfam Aminotransferase class I and II 42 420 IPR004839 GO:0009058|GO:0030170
Bhi04g00467 454 Gene3D Aspartate Aminotransferase, domain 1 30 420 IPR015422 GO:0003824
Bhi04g00467 454 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 266 279 IPR004838 GO:0003824|GO:0009058|GO:0030170
Bhi04g00467 454 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 44 70 - -
Bhi04g00467 454 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 77 93 - -
Bhi04g00467 454 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 114 134 - -
Bhi04g00467 454 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 136 157 - -
Bhi04g00467 454 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 190 214 - -
Bhi04g00467 454 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 226 249 - -
Bhi04g00467 454 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 260 284 - -
Bhi04g00467 454 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 292 315 - -
Bhi04g00467 454 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9 2 434 - -
Bhi04g00467 454 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 2 434 - -
Bhi04g00467 454 Gene3D - 64 315 IPR015421 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00467 K01762 ACS; 1-aminocyclopropane-1-carboxylate synthase [EC:4.4.1.14] - csv:101213522 735.332
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00467 Bhi-Chr4:11944439 Bhi11g00847 Bhi-Chr11:24815079 0 dispersed
Bhi03g01079 Bhi-Chr3:21834984 Bhi04g00467 Bhi-Chr4:11944439 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g599 Blo01g01481 . . . Bpe02g00470 . . Bma01g02225 Cmo05g00121 . . . . . Sed11g0907 . . Bhi04g00467 Tan02g1683 Cmetu03g1555 . Hepe08g1362 . Lcy13g2159 Cla08g01646 Cam08g2149 Cec08g1738 Cco08g1856 Clacu08g1837 . Cre08g1621 Cone4ag1638 . Cone17ag0907 Cone20ag0251 . . . Cme03g02130 . . . . . . . . . . . . Cma05g00118 Car05g00101 . Cpe11g00103 . . . . . . . . . . . . . . . Lsi08g01554 Csa02g01865 Chy03g01621 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000568 4 3 5 5 5 3 5 3 3 2 3 3 5 2 3 5 3 6 5 3 3 4 2 3 2 3 3 4 3 1 104
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00467 Bhi_Chr04 FPKM 28.783783 23.406822 29.076035 32.598568 36.492458 25.471319 30.655409 44.089302 54.934578 53.294434