Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00472 TCTTTCTCTCCTATATAATAATTATATATTTTGTTATCTCCCAACACAACAAACCACTTTCTCTTGTTCTTCCCTATTAAAATTCTCCATTATCATATTTTTCTGCAATCAAATTTGTTCATAAAAACAGCAATACTTATAAGATCAATAATCAGCCACCATGATTCACACAAGACTCTTCTCCCCGTCTTTTCGCCTTCTTTCTTCATCTTCTTTTTCAAAGAAGGGAAAACGAAAGCTTAGAGGAGGCTGCTATGGCGATGCGTTTAGGGCAGTATCTTCAATGCCGGAGCCTTGTCGATCATCGCCTCTCAGTGATGATGAGAGCTGTGATTTTGACTGGGATAGTCTTGGATTTGGGCTAATGCCAACAGATTATATGTATATTATGAAATGCTCTAAAGATGAGAATTTTGAACGAGGTCAAATGAGCCGTTATGGGAACATTGAGTTGAGCCCTTCTGCTGGGGTTCTAAATTATGGCCAGGGGTTGTTTGAAGGTCTAAAAGCTTATAGGAAAGAAGGTGGAGGCTTTCTTCTCTTTCGTCCAGACCAAAATGCTCTTCGTATGAAAACTGGTGCTGAACGAATGTGTATGCCGTCGCCCTCCATCGAGCAGTTTGTTGATGCTGTGAAGCAAATTACCATTGCTAATAGGCGTTGGGTCCCTCCGCTGGGGAAAGGATCACTTTACATAAGGCCTTTGCTCATTGGAACTGGTCCTGTTCTCGGCTTGGCTCCAGCGCCCGAGTATACTTTTCTAATTTATGCTTCCCCTGTTCGCAACTATTTTAAGGAAGGTTCGGCACCCTTGAACCTATACGTTGAGAATGAATTCGTTCGTGCATCTCGTGGTGGAGCTGGAGGTGTGAAAACCATTTCAAATTACGCTCCGGTCTTAAAAGCTATTACCCGAGCGAAAAGCCGAGGGTTTTCTGATGTCTTATACCTTGATTCGGTGAATAAGAGAGATCTGGAAGAAGTTTCTTCTTGCAACATTTTCCTTGTAAAGGGCAATGTTATTTCAACTCCTGCTACAAATGGAACAATTCTTCCAGGAGTAACCCGGAAAAGCATCATTGAAATTGCCCGTGATCGCGGTTACGAGGTCGAGGAACGGGCCATTAACATGGAAGAACTGTTTGACGCTCGTGAAGTTTTCTGCACTGGAACAGCTGTTGGTGTGGCCCCAGTTGGCAGCATCAAATGTATGGATAGAAGGATTGAATACCAAACAGGCGCTGACACAACATGCCAAGAACTATATTCAACTCTTGTTGGGATTCAAACTGGAACCATTGAGGATAAGATGGGGTGGACTGTTGAGATCTCTTGAGTTTTCATCTGCCCCATCAACATGAATCGTAAATTGCATATCACATGTCGATTCTCTGCGGTCGGGTTGTCCGTATAATGTCTCAAAGTTTGGTATTGTTTTACTTTTCATTAGTACCATAGCTGTAAACTTATGTACAGAATAATTAACCAGCAAGCCTTCTCAATGAATTGAATTTCAATACAAGTTGGAAATTTGTAGGAGGGGGATCAAAAGCTGGAGATTCATATGAAAATGATGAACAAATTGAAATCTTTTATATATAAATTTTGTGCATTGTGAAGAAA 1623 41.22 MIHTRLFSPSFRLLSSSSFSKKGKRKLRGGCYGDAFRAVSSMPEPCRSSPLSDDESCDFDWDSLGFGLMPTDYMYIMKCSKDENFERGQMSRYGNIELSPSAGVLNYGQGLFEGLKAYRKEGGGFLLFRPDQNALRMKTGAERMCMPSPSIEQFVDAVKQITIANRRWVPPLGKGSLYIRPLLIGTGPVLGLAPAPEYTFLIYASPVRNYFKEGSAPLNLYVENEFVRASRGGAGGVKTISNYAPVLKAITRAKSRGFSDVLYLDSVNKRDLEEVSSCNIFLVKGNVISTPATNGTILPGVTRKSIIEIARDRGYEVEERAINMEELFDAREVFCTGTAVGVAPVGSIKCMDRRIEYQTGADTTCQELYSTLVGIQTGTIEDKMGWTVEIS 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12055042 12059928 - XM_039028231.1 Bhi04g00472 32081

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00472 391 CDD BCAT_beta_family 97 378 IPR033939 GO:0004084|GO:0009081
Bhi04g00472 391 PIRSF BCAT1 42 391 IPR005786 GO:0004084|GO:0009081
Bhi04g00472 391 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 53 387 IPR036038 GO:0003824
Bhi04g00472 391 Gene3D - 43 219 IPR043131 -
Bhi04g00472 391 PANTHER BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE 25 390 - -
Bhi04g00472 391 Gene3D - 220 391 IPR043132 -
Bhi04g00472 391 PANTHER AMINO ACID AMINOTRANSFERASE 25 390 IPR005786 GO:0004084|GO:0009081
Bhi04g00472 391 TIGRFAM ilvE_II: branched-chain amino acid aminotransferase 86 390 IPR005786 GO:0004084|GO:0009081
Bhi04g00472 391 ProSitePatterns Aminotransferases class-IV signature. 274 303 IPR018300 GO:0003824
Bhi04g00472 391 Pfam Amino-transferase class IV 110 348 IPR001544 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00472 K00826 E2.6.1.42, ilvE; branched-chain amino acid aminotransferase [EC:2.6.1.42] - csv:101214004 697.967
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00472 Bhi-Chr4:12055042 Bhi05g01927 Bhi-Chr5:59986717 1.93E-08 dispersed
Bhi04g00472 Bhi-Chr4:12055042 Bhi04g00473 Bhi-Chr4:12055042 0 tandem
Bhi03g01081 Bhi-Chr3:21935948 Bhi04g00472 Bhi-Chr4:12055042 2.43E-173 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g593 . . . . . . . . Cmo05g00119 . . . . Car12g00561 . . . Bhi04g00472 . . . . . . . . . . . . . Cone6ag1482 . Cone8ag0180 Cone12ag0187 . . . . . . . . . . . . . . . . Cma05g00115 . . Cpe11g00101 . . . . . . . . . . . . . . . . Csa02g01862 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007941 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00472 Bhi_Chr04 FPKM 13.428452 13.874951 13.475662 12.129508 16.015783 16.435106 16.276714 21.576651 22.902174 20.444828