Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00474 CAATTCAGTACCTGTTTTGGCAACCAATTCTTCATCTCCTGCGGGCAATTTCGTAATTAGATCATCCTCTTCTTCAAATGGGAATCAGATGATCATGGCCGTAAATTCAAATCTCCCCTCCGGTTGGAGCTCCGCCAGAGGTGGCAGCGAAACTTAGTTCGGTACGGGAGGAATTCGAGCGGCGACGATCTTCAATGGCGTCCACTGAGAGTTCATCAATTGATCCTGATCTTGATCAATTTATGGAAGCTTATTATGGGATGTTAGTGAAGTATAGAGAGGAGCTAACAAGGCCAATTCAAGAAGCTGTAGATTTCATGCACAGAATTGAATCTCAGCTTAATACTCTCTGCAATGGCTCCTTTCAAATCTTAGCATCTGAAGGGAAATGTGAAGGAATGGGATCGTCGTCGTCGGAGGAAGAGAAAGGCGGGGAAGGGGAAAGAGAGATAGAAGATCAAATCGACCCACGAGCGGAAGAACGAGAGCTTAAGAATCACTTACTCAAAAAATACAGTGGTTATCTTAGCAGTTTAAAGCAAGAACTTTCCAAGAAAAAGAAGAAAGGCAAACTCCCAAAAGACGCAAGACAAGAGCTGCTTCGTTGGTGGGAATTGCACAACAAATGGCCTTACCCATCGGAGGCAGAAAAGTTGGCGCTGGCGGAATCAACTGGGCTTGACCAGAAACAGATAAATAATTGGTTCATAAACCAAAGGAAAAGGCACTGGAAGCCTTCTGAGGATGTGCAGTTTATGGGTATGGAGGGGTTTTACCATCCCAATGCCGCTGCTGCTTTTTACTTTGATGGCCATTTCATGACTGATTCCCATAATTATCGTTTGGGTCCATGAGTGGGAAGCTACAGTAATATATATATATATATATATATATATATATAATGCGCTTCTAAAACACACCTCTTGTTTTAGTTGTTAGCCTATATTTGTATGGATATACTTTTTGTTTAGTCCCTAATTAATTCCCTATTGCTTAAAAATGGAGGGGGGCGGGGTGGAGGAGTAATAGTTCATGGTAGAGTATTTGTAATTTTATTGTGCTTAAAGTCATAATTTCCTGCCCTCTCATTTGGTGAATATTCCTAAATGCAAGTCAAATAATAGTATCCAATTCCTTTCCTCA 1143 41.38 MASTESSSIDPDLDQFMEAYYGMLVKYREELTRPIQEAVDFMHRIESQLNTLCNGSFQILASEGKCEGMGSSSSEEEKGGEGEREIEDQIDPRAEERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQELLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFMGMEGFYHPNAAAAFYFDGHFMTDSHNYRLGP 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12094223 12100262 - XM_039028644.1 Bhi04g00474 32083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00474 219 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 7 210 - -
Bhi04g00474 219 ProSiteProfiles ELK domain profile. 98 118 IPR005539 GO:0003677
Bhi04g00474 219 ProSitePatterns 'Homeobox' domain signature. 156 179 IPR017970 GO:0000981|GO:0006355
Bhi04g00474 219 CDD homeodomain 130 182 IPR001356 GO:0003677
Bhi04g00474 219 Gene3D - 115 188 - -
Bhi04g00474 219 Pfam Homeobox KN domain 138 177 IPR008422 GO:0003677|GO:0006355
Bhi04g00474 219 ProSiteProfiles 'Homeobox' domain profile. 118 181 IPR001356 GO:0003677
Bhi04g00474 219 SMART KNOX2_2 3 54 IPR005541 GO:0003677|GO:0005634
Bhi04g00474 219 Pfam KNOX2 domain 9 53 IPR005541 GO:0003677|GO:0005634
Bhi04g00474 219 Pfam ELK domain 98 119 IPR005539 GO:0003677
Bhi04g00474 219 SMART ELK_2 98 119 IPR005539 GO:0003677
Bhi04g00474 219 MobiDBLite consensus disorder prediction 70 94 - -
Bhi04g00474 219 SMART HOX_1 120 185 IPR001356 GO:0003677
Bhi04g00474 219 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 7 210 - -
Bhi04g00474 219 MobiDBLite consensus disorder prediction 64 94 - -
Bhi04g00474 219 SUPERFAMILY Homeodomain-like 119 191 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bhi04g00474 Bhi09g03182 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00474 Bhi-Chr4:12094223 Bhi07g01752 Bhi-Chr7:48154438 2.09E-66 dispersed
Bhi04g00474 Bhi-Chr4:12094223 Bhi04g00475 Bhi-Chr4:12094223 1.19E-165 tandem
Bhi04g00474 Bhi-Chr4:12094223 Bhi09g03182 Bhi-Chr9:81520335 2.11E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
879 PF03791 KNOX2 2.90E-23 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00474 - - csv:101219997 350.132