Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00475 ATTCCCTTTTTGTTCCTCTTTAATGCCGCACTCTCAAATCTATAACCCACCCCTTACCCAAAACACACATTCCTAAAAATTTCCGAAATCAGTTCATTTCTGTACCATTTCAAATTTTTTATTTTTTAAATTTAAAAATTTATTAAAAAAAAAAAAAAAAACCCAGCTCATAAACACAACCTTTTTGGCCCTGTCCTATGGAAGTTGACTGCTAGCTTTTCTCCATAACTTCACTGTTTAATTATTCTCCACTTTAGGGTTTTCTAATCATTCCTTTTCCTTTTTTTTCTTCCCCTCTCTCTTTTGATAGTACTGGGTTCCCTTTTTTTAATTTTTAATTTTAATTTTTTTTAAAAAAAGAAATATATTTTATGTTTTATATTTTATTTTATAATGGAAGATCAGTACAAGGTTCATGGTGATAGGTGTAGGGGAAATTTCTTGTACAATTCAGTACCTGTTTTGGCAACCAATTCTTCATCTCCTGCGGGCAATTTCGTAATTAGATCATCCTCTTCTTCAAATGGGAATCAGATGATCATGGCCGTAAATTCAAATCTCCCCTCCGGTGACTCCAATTATTTCCCTCCCTCCGATCAACTTGTCAAATTGGAGCCTCCCACTACTGCTGCTTCACAATCTCAAATTCAAGTTCATGATTTTCATTACCATTTAATGAGAGAGTTCCAAAATAATCATAATCATATTAATATTAATAATAATAATGTTGATTCAATTAAAGCCAAAATTCTTTCTCACTCTCTTTTCTCTAACCTCCTCCAAGCTTTCTTGGATTGCCAAAACGTTGGAGCTCCGCCAGAGGTGGCAGCGAAACTTAGTTCGGTACGGGAGGAATTCGAGCGGCGACGATCTTCAATGGCGTCCACTGAGAGTTCATCAATTGATCCTGATCTTGATCAATTTATGGAAGCTTATTATGGGATGTTAGTGAAGTATAGAGAGGAGCTAACAAGGCCAATTCAAGAAGCTGTAGATTTCATGCACAGAATTGAATCTCAGCTTAATACTCTCTGCAATGGCTCCTTTCAAATCTTAGCATCTGAAGGGAAATGTGAAGGAATGGGATCGTCGTCGTCGGAGGAAGAGAAAGGCGGGGAAGGGGAAAGAGAGATAGAAGATCAAATCGACCCACGAGCGGAAGAACGAGAGCTTAAGAATCACTTACTCAAAAAATACAGTGGTTATCTTAGCAGTTTAAAGCAAGAACTTTCCAAGAAAAAGAAGAAAGGCAAACTCCCAAAAGACGCAAGACAAGAGCTGCTTCGTTGGTGGGAATTGCACAACAAATGGCCTTACCCATCGGAGGCAGAAAAGTTGGCGCTGGCGGAATCAACTGGGCTTGACCAGAAACAGATAAATAATTGGTTCATAAACCAAAGGAAAAGGCACTGGAAGCCTTCTGAGGATGTGCAGTTTATGGGTATGGAGGGGTTTTACCATCCCAATGCCGCTGCTGCTTTTTACTTTGATGGCCATTTCATGACTGATTCCCATAATTATCGTTTGGGTCCATGAGTGGGAAGCTACAGTAATATATATATATATATATATATATATATATAATGCGCTTCTAAAACACACCTCTTGTTTTAGTTGTTAGCCTATATTTGTATGGATATACTTTTTGTTTAGTCCCTAATTAATTCCCTATTGCTTAAAAATGGAGGGGGGCGGGGTGGAGGAGTAATAGTTCATGGTAGAGTATTTGTAATTTTATTGTGCTTAAAGTCATAATTTCCTGCCCTCTCATTTGGTGAATATTCCTAAATGCAAGTCAAATAATAGTATCCAATTCCTTTCCTCA 1825 37.37 MEDQYKVHGDRCRGNFLYNSVPVLATNSSSPAGNFVIRSSSSSNGNQMIMAVNSNLPSGDSNYFPPSDQLVKLEPPTTAASQSQIQVHDFHYHLMREFQNNHNHININNNNVDSIKAKILSHSLFSNLLQAFLDCQNVGAPPEVAAKLSSVREEFERRRSSMASTESSSIDPDLDQFMEAYYGMLVKYREELTRPIQEAVDFMHRIESQLNTLCNGSFQILASEGKCEGMGSSSSEEEKGGEGEREIEDQIDPRAEERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQELLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFMGMEGFYHPNAAAAFYFDGHFMTDSHNYRLGP 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12094223 12100708 - XM_039028643.1 Bhi04g00475 32084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00475 380 Pfam ELK domain 259 280 IPR005539 GO:0003677
Bhi04g00475 380 MobiDBLite consensus disorder prediction 226 255 - -
Bhi04g00475 380 CDD homeodomain 291 343 IPR001356 GO:0003677
Bhi04g00475 380 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 370 - -
Bhi04g00475 380 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 2 370 - -
Bhi04g00475 380 ProSiteProfiles 'Homeobox' domain profile. 279 342 IPR001356 GO:0003677
Bhi04g00475 380 MobiDBLite consensus disorder prediction 231 255 - -
Bhi04g00475 380 Gene3D - 276 348 - -
Bhi04g00475 380 SMART ELK_2 259 280 IPR005539 GO:0003677
Bhi04g00475 380 ProSitePatterns 'Homeobox' domain signature. 317 340 IPR017970 GO:0000981|GO:0006355
Bhi04g00475 380 ProSiteProfiles ELK domain profile. 259 279 IPR005539 GO:0003677
Bhi04g00475 380 Pfam KNOX1 domain 115 156 IPR005540 GO:0003677|GO:0005634
Bhi04g00475 380 Pfam KNOX2 domain 170 214 IPR005541 GO:0003677|GO:0005634
Bhi04g00475 380 SMART KNOX2_2 164 215 IPR005541 GO:0003677|GO:0005634
Bhi04g00475 380 SMART HOX_1 281 346 IPR001356 GO:0003677
Bhi04g00475 380 Pfam Homeobox KN domain 299 338 IPR008422 GO:0003677|GO:0006355
Bhi04g00475 380 SMART KNOX1_2 113 157 IPR005540 GO:0003677|GO:0005634
Bhi04g00475 380 SUPERFAMILY Homeodomain-like 280 352 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00475 Bhi-Chr4:12094223 Bhi09g03182 Bhi-Chr9:81520335 1.59E-136 dispersed
Bhi04g00474 Bhi-Chr4:12094223 Bhi04g00475 Bhi-Chr4:12094223 1.19E-165 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
880 PF03791 KNOX2 6.70E-23 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00475 - - csv:101219997 567.385