Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bhi04g00475 | ATTCCCTTTTTGTTCCTCTTTAATGCCGCACTCTCAAATCTATAACCCACCCCTTACCCAAAACACACATTCCTAAAAATTTCCGAAATCAGTTCATTTCTGTACCATTTCAAATTTTTTATTTTTTAAATTTAAAAATTTATTAAAAAAAAAAAAAAAAACCCAGCTCATAAACACAACCTTTTTGGCCCTGTCCTATGGAAGTTGACTGCTAGCTTTTCTCCATAACTTCACTGTTTAATTATTCTCCACTTTAGGGTTTTCTAATCATTCCTTTTCCTTTTTTTTCTTCCCCTCTCTCTTTTGATAGTACTGGGTTCCCTTTTTTTAATTTTTAATTTTAATTTTTTTTAAAAAAAGAAATATATTTTATGTTTTATATTTTATTTTATAATGGAAGATCAGTACAAGGTTCATGGTGATAGGTGTAGGGGAAATTTCTTGTACAATTCAGTACCTGTTTTGGCAACCAATTCTTCATCTCCTGCGGGCAATTTCGTAATTAGATCATCCTCTTCTTCAAATGGGAATCAGATGATCATGGCCGTAAATTCAAATCTCCCCTCCGGTGACTCCAATTATTTCCCTCCCTCCGATCAACTTGTCAAATTGGAGCCTCCCACTACTGCTGCTTCACAATCTCAAATTCAAGTTCATGATTTTCATTACCATTTAATGAGAGAGTTCCAAAATAATCATAATCATATTAATATTAATAATAATAATGTTGATTCAATTAAAGCCAAAATTCTTTCTCACTCTCTTTTCTCTAACCTCCTCCAAGCTTTCTTGGATTGCCAAAACGTTGGAGCTCCGCCAGAGGTGGCAGCGAAACTTAGTTCGGTACGGGAGGAATTCGAGCGGCGACGATCTTCAATGGCGTCCACTGAGAGTTCATCAATTGATCCTGATCTTGATCAATTTATGGAAGCTTATTATGGGATGTTAGTGAAGTATAGAGAGGAGCTAACAAGGCCAATTCAAGAAGCTGTAGATTTCATGCACAGAATTGAATCTCAGCTTAATACTCTCTGCAATGGCTCCTTTCAAATCTTAGCATCTGAAGGGAAATGTGAAGGAATGGGATCGTCGTCGTCGGAGGAAGAGAAAGGCGGGGAAGGGGAAAGAGAGATAGAAGATCAAATCGACCCACGAGCGGAAGAACGAGAGCTTAAGAATCACTTACTCAAAAAATACAGTGGTTATCTTAGCAGTTTAAAGCAAGAACTTTCCAAGAAAAAGAAGAAAGGCAAACTCCCAAAAGACGCAAGACAAGAGCTGCTTCGTTGGTGGGAATTGCACAACAAATGGCCTTACCCATCGGAGGCAGAAAAGTTGGCGCTGGCGGAATCAACTGGGCTTGACCAGAAACAGATAAATAATTGGTTCATAAACCAAAGGAAAAGGCACTGGAAGCCTTCTGAGGATGTGCAGTTTATGGGTATGGAGGGGTTTTACCATCCCAATGCCGCTGCTGCTTTTTACTTTGATGGCCATTTCATGACTGATTCCCATAATTATCGTTTGGGTCCATGAGTGGGAAGCTACAGTAATATATATATATATATATATATATATATATAATGCGCTTCTAAAACACACCTCTTGTTTTAGTTGTTAGCCTATATTTGTATGGATATACTTTTTGTTTAGTCCCTAATTAATTCCCTATTGCTTAAAAATGGAGGGGGGCGGGGTGGAGGAGTAATAGTTCATGGTAGAGTATTTGTAATTTTATTGTGCTTAAAGTCATAATTTCCTGCCCTCTCATTTGGTGAATATTCCTAAATGCAAGTCAAATAATAGTATCCAATTCCTTTCCTCA | 1825 | 37.37 | MEDQYKVHGDRCRGNFLYNSVPVLATNSSSPAGNFVIRSSSSSNGNQMIMAVNSNLPSGDSNYFPPSDQLVKLEPPTTAASQSQIQVHDFHYHLMREFQNNHNHININNNNVDSIKAKILSHSLFSNLLQAFLDCQNVGAPPEVAAKLSSVREEFERRRSSMASTESSSIDPDLDQFMEAYYGMLVKYREELTRPIQEAVDFMHRIESQLNTLCNGSFQILASEGKCEGMGSSSSEEEKGGEGEREIEDQIDPRAEERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQELLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFMGMEGFYHPNAAAAFYFDGHFMTDSHNYRLGP | 380 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 12094223 | 12100708 | - | XM_039028643.1 | Bhi04g00475 | 32084 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bhi04g00475 | 380 | Pfam | ELK domain | 259 | 280 | IPR005539 | GO:0003677 | |
Bhi04g00475 | 380 | MobiDBLite | consensus disorder prediction | 226 | 255 | - | - | |
Bhi04g00475 | 380 | CDD | homeodomain | 291 | 343 | IPR001356 | GO:0003677 | |
Bhi04g00475 | 380 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 2 | 370 | - | - | |
Bhi04g00475 | 380 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 | 2 | 370 | - | - | |
Bhi04g00475 | 380 | ProSiteProfiles | 'Homeobox' domain profile. | 279 | 342 | IPR001356 | GO:0003677 | |
Bhi04g00475 | 380 | MobiDBLite | consensus disorder prediction | 231 | 255 | - | - | |
Bhi04g00475 | 380 | Gene3D | - | 276 | 348 | - | - | |
Bhi04g00475 | 380 | SMART | ELK_2 | 259 | 280 | IPR005539 | GO:0003677 | |
Bhi04g00475 | 380 | ProSitePatterns | 'Homeobox' domain signature. | 317 | 340 | IPR017970 | GO:0000981|GO:0006355 | |
Bhi04g00475 | 380 | ProSiteProfiles | ELK domain profile. | 259 | 279 | IPR005539 | GO:0003677 | |
Bhi04g00475 | 380 | Pfam | KNOX1 domain | 115 | 156 | IPR005540 | GO:0003677|GO:0005634 | |
Bhi04g00475 | 380 | Pfam | KNOX2 domain | 170 | 214 | IPR005541 | GO:0003677|GO:0005634 | |
Bhi04g00475 | 380 | SMART | KNOX2_2 | 164 | 215 | IPR005541 | GO:0003677|GO:0005634 | |
Bhi04g00475 | 380 | SMART | HOX_1 | 281 | 346 | IPR001356 | GO:0003677 | |
Bhi04g00475 | 380 | Pfam | Homeobox KN domain | 299 | 338 | IPR008422 | GO:0003677|GO:0006355 | |
Bhi04g00475 | 380 | SMART | KNOX1_2 | 113 | 157 | IPR005540 | GO:0003677|GO:0005634 | |
Bhi04g00475 | 380 | SUPERFAMILY | Homeodomain-like | 280 | 352 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bhi04g00475 | Bhi-Chr4:12094223 | Bhi09g03182 | Bhi-Chr9:81520335 | 1.59E-136 | dispersed | |
Bhi04g00474 | Bhi-Chr4:12094223 | Bhi04g00475 | Bhi-Chr4:12094223 | 1.19E-165 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
880 | PF03791 | KNOX2 | 6.70E-23 | No_clan | Bhi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bhi04g00475 | - | - | csv:101219997 | 567.385 |