Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00482 TCATGATCAATTTGATATTGTTTTGATCTATCTTCCTTCCTGTTAATCAAGTTGTGGCCTGTGGATTGACGTGCGATTCTTCGTACCGTAGGACATTGTTTTCTCTCTTATCGAAGCTTTAATTGCTATTTGTTTGGCCAATGAAGAATCGTGGAATAAGCTTGACTCATGTTGGAAACTGATTCTTGATGCAAGAGAATCACAATGATGCAATTATCCACGGCTAGAGTAGAAGAATTTGTTTCGAAATTTCGAAAGACATGTCGCTCTTAGTATATGGTGAAAATCAGACTGATCCTGAAACCAACGCAACCTTGGTTCCTATACATATCGTTACTCATGTATCTCAACTGCCTAACGAGTTTGTTGAACCATCACCTGAAAAGCCTCTGGTAGTTGGCTTTGATTGTGAAGGTGTTGACCTGTGTCGCCATGGAAACCTCTGTGTCATGCAGATTGCATTTCCAGATGCTGTATATTTGGTTGATGCTGTTCAGGGAGGAGAGGAACTTGTGAAAGTCTGTAAGCCTGCCCTTGAGTCCAAATATGTCACAAAAGTTATTCATGATTGCAAACGAGATAGCGAGGCATTGTACTTTCAGTTTGGTATCAAGTTGAACAACGTTATTGATACACAGATTGCATATTCACTTTTAGAGGAGCAAGAGGGACGGACAAAGACACCAGATAACTATATCTCCTTTGTTAGTCTTCTTGCAGATTCACGTTATTGTGGTGTATCATATGTGGAGAAGGAAGAGGTCCGCCTCCTACTTAGAAAGGACCCCAAGTTTTGGACCTATAGACCATTGTCTGAATTGATGGTCCGTGCAGCTGCTGACGATGTACGCTTTCTGCTTTACATCTATCACAAGATGATGGAGAAATTGAATCATCAATCACTGTGGTACCTTGCAGTGCGTGGTGCTTTGTACTGTCGGTGTTTTTGCATCAGTGATAATGAATATGCTGACTGGCCTCCTCTCCCTTCTGTTCCAGATAACCTTGTAGTAGAGGGCAATGCTCCTGACGAAGAAATTCTTTCAGTATTAGATGTTCCCCATGGAATGATGGGACGCGTAATTGGTAGGAAGGGAGCCTCAATTTTGTCAATAAAGGAATCTTGCAATGCGGAAATTCTCATTGGCGGTGCTAAGGGCCCACCGGACAAGGTATTCATTATCGGATCGGTGAGGCAGGTGAGGAAGGCAGAAGCTATGCTAAGAGGAAGGATGCTTGAAATATGATTGAAATTAAAAAT 1261 41.95 MSLLVYGENQTDPETNATLVPIHIVTHVSQLPNEFVEPSPEKPLVVGFDCEGVDLCRHGNLCVMQIAFPDAVYLVDAVQGGEELVKVCKPALESKYVTKVIHDCKRDSEALYFQFGIKLNNVIDTQIAYSLLEEQEGRTKTPDNYISFVSLLADSRYCGVSYVEKEEVRLLLRKDPKFWTYRPLSELMVRAAADDVRFLLYIYHKMMEKLNHQSLWYLAVRGALYCRCFCISDNEYADWPPLPSVPDNLVVEGNAPDEEILSVLDVPHGMMGRVIGRKGASILSIKESCNAEILIGGAKGPPDKVFIIGSVRQVRKAEAMLRGRMLEI 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12182586 12187519 - XM_039030684.1 Bhi04g00482 32091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00482 328 PANTHER EGALITARIAN, ISOFORM B 14 326 - -
Bhi04g00482 328 CDD KH-I 264 321 - -
Bhi04g00482 328 Pfam KH domain 264 322 IPR004088 GO:0003723
Bhi04g00482 328 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 255 326 IPR036612 GO:0003723
Bhi04g00482 328 ProSiteProfiles Type-1 KH domain profile. 259 321 - -
Bhi04g00482 328 SMART 35exoneu6 22 211 IPR002562 GO:0003676|GO:0006139|GO:0008408
Bhi04g00482 328 SUPERFAMILY Ribonuclease H-like 16 236 IPR012337 -
Bhi04g00482 328 Pfam 3'-5' exonuclease 32 210 IPR002562 GO:0003676|GO:0006139|GO:0008408
Bhi04g00482 328 PANTHER - 14 326 - -
Bhi04g00482 328 SMART kh_6 258 326 IPR004087 GO:0003676
Bhi04g00482 328 Gene3D - 5 226 IPR036397 GO:0003676
Bhi04g00482 328 Gene3D K Homology domain, type 1 250 326 IPR036612 GO:0003723
Bhi04g00482 328 CDD Egl_like_exo 35 230 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00482 K18740 EXD1, EGL; exonuclease 3'-5' domain-containing protein 1 - csv:101214970 639.802
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00482 Bhi-Chr4:12182586 Bhi03g02330 Bhi-Chr3:51131463 1.97E-07 dispersed
Bhi04g00481 Bhi-Chr4:12182320 Bhi04g00482 Bhi-Chr4:12182586 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g47 . . . . . . . . Cmo05g00116 Cmo12g00562 . Cma05g00110 . Car12g00572 Sed14g1534 Cpe07g00545 . Bhi04g00482 Tan02g2217 Cmetu04g2861 . Hepe08g1373 . Lcy13g2168 . . . . . . . . . Cone17ag0911 Cone20ag0254 . . . . . . . . . . . . . . . . Cma12g00625 . Car05g00095 Cpe11g00090 . . . . . . . . . . . . . . . Lsi08g01564 Csa02g01857 Chy03g01628 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006700 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00482 Bhi_Chr04 FPKM 1.652083 0.548953 0.687906 0.0 0.0 0.0 0.245202 0.608907 1.010074 0.52978