Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00495 GAGTGGTTGGCGCTCCCAATGCCAAACTTCTCAGATCCTTCCTTCCCCCAATTTTGACTTCTCTCCATTTCTTCATCCTTCGAATTCCACGTTTCCCATTTCTCAAATTTTATAATCAAGATCGTCTCTAAGAATCCAGTCTTCTTCACTCATTTGTATATTCAATTTTTTCTGGGGTTTTGGATTTGGATAATTGTTTTTCCAATTTTCGACTCCAGGGACGCCACCTCTTCCTCTCTCGCCCTTTCCAATATGAAGCTTCATGGTTACACCAATACCCTCAATTCGGATCACAGGGTTTCAACGTTATGCTCTTTGCCAAAATCTGGCGTGTCCTCCTCTTGCAAATCCTCTGGAAGTTTGCAAGTTCGTGATAAGTCAACAGGATTAGTGGTTTCTTGTTCTAGTTCTAATGGTCACAGAGATGTGATGCAGGGGCTACACCTTTCTGGCCCCATTGAGAAGAGAAGCCGTCTAGGACAAGCATTTTGCTCAGTAGGAACTTTCACTGTTGGTGAATTTGCTTTGGAATCTCACTCTCAGGCAGTGGAAGAGAAGATTGGAGTTCTACTCCTGAATCTAGGAGGGCCAGAAACGCTTGATGATGTTAAGCCATTTCTGTATAATCTATTTGCAGATCCGGATATTATCCGGCTCCCAAGGTTGTTCCGTTTCCTCCAAGAGCCATTGGCAAAATTAATATCTACCTTTCGTGCTCCGAAAAGCAAAGAAGGGTATGCTTCAATAGGAGGTGGCTCACCTTTGCGTAAAATAACAGATGAGCAGGCACAAGCGCTTAAAATGGCTTTGGAGGAGAAAAACATATCTGCTAATGTCTATGTGGGAATGCGCTATTGGTACCCTTTCACAGAGGAAGCAATTCAGCAAATTAAAAGGGATGCAATAACAAGACTTGTGGTGCTACCACTGTATCCACAATACTCTATTTCTACAACTGGGTCAAGTATTCGTGTTCTCCAGAAGATGTTCAGGGAAGATGCATCTCTCTCAACATTGCCTGTTTCAATTATAAAATCCTGGTATCAACGAGAAGGGTATATTAAGTCAATGGCCGACTTGATTCAGGCAGAGCTGAAGAATTTTGCCAATCCTCAAGAGGTCATGATTTTCTTTAGTGCACATGGGGTTCCAGTCAGTTATGTTGAGAATGCTGGTGATCCATACAAAGATGAAATGGAGGAGTGCATCTACCTAATCATGCAAGAGATGAAAGCTAGAGGAATTGGAAATGAGCATACTCTTGCATACCAGAGCCGTGTTGGACCTGTACAATGGCTGAAGCCATACACAGATGAAGTTCTTGTTGAGCTTGGCCAGAAGGGTATTAAGAGTCTTCTAGCCGTTCCCGTGAGCTTTGTGAGTGAACACATTGAGACTCTTGAGGAAATAGATATGGAGTACAAGCACTTGGCACTTGAATCTGGGATCGAAAACTGGGGGCGTGTGCCTGCTCTCAACTGCAAATCTTCATTCATTTTGGATTTGGCTGATGCAGTAATTGAAGCTCTTCCGTCCGCCACAGCTTTGTCGCCCCATGCAAACTCAACAGATGCAGATGATCGTGATCCTTTCCAATATGCTATCAAATTGTTATTTGGTTCAGTACTCGCATTCATCTTGTTACTTTCACCAAAAGCATTTCTGGCATTTAGGAATAATATCCTTTAAACATACAAGATAGGAATAGCTCTGGTGTAGCCAGGAGTGGGGGGAAAGAACTTTTTTTTTGGGATTTTGGGGTTCAACTTAAATTGACATGAGAAAAATAATAGAAATTCACAGTGCCACACATTTTACGTTTTGTATAACTTTTATATAAGAGCAAATACTGATTCACTATAAAAATTTATCACACTCGATCAAAA 1886 41.73 MKLHGYTNTLNSDHRVSTLCSLPKSGVSSSCKSSGSLQVRDKSTGLVVSCSSSNGHRDVMQGLHLSGPIEKRSRLGQAFCSVGTFTVGEFALESHSQAVEEKIGVLLLNLGGPETLDDVKPFLYNLFADPDIIRLPRLFRFLQEPLAKLISTFRAPKSKEGYASIGGGSPLRKITDEQAQALKMALEEKNISANVYVGMRYWYPFTEEAIQQIKRDAITRLVVLPLYPQYSISTTGSSIRVLQKMFREDASLSTLPVSIIKSWYQREGYIKSMADLIQAELKNFANPQEVMIFFSAHGVPVSYVENAGDPYKDEMEECIYLIMQEMKARGIGNEHTLAYQSRVGPVQWLKPYTDEVLVELGQKGIKSLLAVPVSFVSEHIETLEEIDMEYKHLALESGIENWGRVPALNCKSSFILDLADAVIEALPSATALSPHANSTDADDRDPFQYAIKLLFGSVLAFILLLSPKAFLAFRNNIL 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12466394 12470222 + XM_039028578.1 Bhi04g00495 32104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00495 478 TIGRFAM hemH: ferrochelatase 101 425 IPR001015 GO:0004325|GO:0006783
Bhi04g00495 478 Hamap Coproporphyrin III ferrochelatase [cpfC]. 101 426 IPR001015 GO:0004325|GO:0006783
Bhi04g00495 478 SUPERFAMILY Chelatase 101 432 - -
Bhi04g00495 478 Gene3D - 264 407 - -
Bhi04g00495 478 Pfam Ferrochelatase 102 425 IPR001015 GO:0004325|GO:0006783
Bhi04g00495 478 PANTHER FERROCHELATASE-1, CHLOROPLASTIC/MITOCHONDRIAL 34 477 - -
Bhi04g00495 478 CDD Ferrochelatase_C 273 409 IPR033644 -
Bhi04g00495 478 Gene3D - 102 426 - -
Bhi04g00495 478 ProSitePatterns Ferrochelatase signature. 292 311 IPR019772 GO:0004325|GO:0006783
Bhi04g00495 478 CDD Ferrochelatase_N 103 265 IPR033659 -
Bhi04g00495 478 PANTHER FERROCHELATASE 34 477 IPR001015 GO:0004325|GO:0006783
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00495 K01772 hemH, FECH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] - csv:101216568 857.055
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00495 Bhi-Chr4:12466394 Bhi10g00924 Bhi-Chr10:19026631 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g60 . Blo12g01008 . . . . . . Cmo05g00110 Cmo12g00571 . Cma05g00103 . Car12g00578 Sed08g1759 Cpe07g00551 . Bhi04g00495 Tan02g1649 Cmetu03g0633 . Hepe08g1382 . Lcy13g2176 . . . . . . . Cone4ag1651 Cone7ag1299 . . . . . . . . . . . . . . . . . . Cma12g00630 . Car05g00089 Cpe11g00083 . . . . . . . . . . . . . . . Lsi08g01574 Csa02g01847 Chy03g01637 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010052 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00495 Bhi_Chr04 FPKM 23.030613 24.634432 16.298244 16.622017 14.927257 12.591426 13.935573 28.287642 29.486105 26.880436