Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00496 CAGTGGTCATTTATCAAAAGGAAACCCATCCTCTTTTTCGCCTCCAGTTTTCTCTTCTTTAGGGTTTCTCTCTCAGACGCTTAACAATGGCTGACGAAGCGCAGTATTCATCTGGTAGTACTGATACAGTTTCCAACAAGCGCAAGTACGACGACCAACCTCCACCCATGGTCACTCGACGCCCGACTGGCTTTTCCGGCCCCATCACTTCCCCTTCTGCTGATTCGGCACATCCTCCGCCTCCTTCCTACAACAACGTCCCGCCACCTATGGATGAGATCCAGATCGCCAAGCAGCGTGCTCAGGAGATTGCCTCTCGGTTGATTATCTCCAGCGGTGGCGTCGGGGCCGGTGCTGGACCTGGCGTTGGAGCCGATGTCAAACGTCCGAGGGTCGAGAACGGCGGCGGGTTTGATTCATACGACAAGGGTTTTAGTTCTGGTCCAGAGCTGAAGCCTCACATGTCAAGTTCAGCCCCTTCAGCAATACCTGTTTCCTATGGTTTCCAAGGGTCAAGCAAGAAAATTGAAATTCCAAATGGGAGAGTTGGCGTAATTATTGGTAAAGGTGGTGAGACCATCAAGTACCTTCAGCTCCAGTCTGGGGCAAAAATACAAGTTACTCGTGACATGGACGCAGATCCCAATTCTACTACCCGGATGGTTGAGCTAATGGGTACCCCTGATCAAATTGCTAAGGCCGAGCAGCTGATAAATGATGTTCTTTCTGAGGCTGAATCTGGAGGTTCTGGCATAGTATCACGAAGATTAACAGGCCCTTCAGGATCTGAGCAGTTTGTTATGAAAATTCCCAATAATAAGGTTGGCTTGGTTATTGGTAAAGGTGGTGAAACAATCAAAAGTATGCAAGCTAGGACTGGAGCACGTATTCAGGTGATACCATTGCACTTACCCCCTGGGGATACATCTACGGAAAGAACCTTACAGATTGATGGTTCAAGCGAGCAGATCGAGTCAGCAAAACAGTTGGTTAATGAAGTTATCAGCGAGAATCGTGCAAGAAATTCAGGTATGTCAGGAGGGTATAATCAGCAAGGTTATCAAGCTCGACCCCCTTCAAGTTGGGGTCCTCCTGGGGCTCCACCAATGCAGCAGCCTAGTTATGGCTATGGACAGCAAGGCGGATACTCTGCTCCTTCGTCTCAGTATAACATGCCACAACCTCCTTATCAGGGTTATTCCCAACCAGCATCTGGTGGATATGCTTCCAATTGGGACCAGTCTACCGTTCCCCCAAATCAACCTGCTACTCAGGGAAGTGGTTATGATTACTACAGTCAACAGCCTCCGCAGCAACAGCAGACACCTGGAGGTCCTGGTGCTACCGGAGACAACAGTGGTGGTTACAGTTATGGTCAACCACAAGCCTCTACTTATAATCAACAGGGTTACTCTCAAGATGGCTATGGTGGTAATTACCATGCACCTCAGTCTGGTTACGGCCAGCCGCCTACATATGATCAGCAAGGTTATGGTTCTACTGCAAACTATGGTAATGTGGCTAATGCAGGCCAAGATGGGCTCAATTCATATGGGTCTCAAGGGGAGTCATCACAGACGGTCCCTCCTGCTGCACAATCCTCTTCAGTGAGCCAGCAAGGTTATAGTGCAAATCAACAGCCTAGCCCTAACCCAGGGAGTTACCCTCCACCAAGTCAGTCGGGGTACGGCATGACTGCACCTTCCCAAACTGGCTATGGAAATCAACCAGCTGCTCAGACTGCATATGGGGCTGCTGCTTATGGAGCTCCTCAGACTCAGAAACAGCCTGCAAATCCTCCTGCCTATGGTCAGAGCACTCAGTCACCAAGCACACCCAGTGGCTATGGGCAACCTGGTGCATTGCCGTCTGGATATTCAAGCTCTCAGCCTCCTGCATCTGGGTACGCTCAATCAGATTCTGCTTCTCAACGTGCTCCACCAACCAGTTATGGTACTGCAGCTCAGCCGGGGTTTGCGCCACCACCTTATGGTGTTCCTCCAACAAATCAGCCAGCTTATGGGCAGGCTCCACCACCTTATAGCTCCTCTTATGGTGCTGCTTACCCTCAGCCTCAATATTCATCTGAAGGTAATGCAGGTGGCGCTACTCGTGGGGGCTATGATTCTGCATCGGCTGCTCAGACAGCGCCGCAAAGTGGTGTTGCAAAGGCATCACCAAAAAGTTGATCAATGTATGTGTTTGTTTAGGTGTGTATGTTGCAGAGAACGGTTAACTTTGTTCCTATGGTTAGATTTTATTAGGCCAGGTAGTGTTACGAGACCTCATTAATGCCTGAATTCTTTACTGTATTTGGTTTTGGTATGGTTAAAACGGTTCTGAAGTTTTTCTTACTCTTGCACAA 2365 49.22 MADEAQYSSGSTDTVSNKRKYDDQPPPMVTRRPTGFSGPITSPSADSAHPPPPSYNNVPPPMDEIQIAKQRAQEIASRLIISSGGVGAGAGPGVGADVKRPRVENGGGFDSYDKGFSSGPELKPHMSSSAPSAIPVSYGFQGSSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSTTRMVELMGTPDQIAKAEQLINDVLSEAESGGSGIVSRRLTGPSGSEQFVMKIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEVISENRARNSGMSGGYNQQGYQARPPSSWGPPGAPPMQQPSYGYGQQGGYSAPSSQYNMPQPPYQGYSQPASGGYASNWDQSTVPPNQPATQGSGYDYYSQQPPQQQQTPGGPGATGDNSGGYSYGQPQASTYNQQGYSQDGYGGNYHAPQSGYGQPPTYDQQGYGSTANYGNVANAGQDGLNSYGSQGESSQTVPPAAQSSSVSQQGYSANQQPSPNPGSYPPPSQSGYGMTAPSQTGYGNQPAAQTAYGAAAYGAPQTQKQPANPPAYGQSTQSPSTPSGYGQPGALPSGYSSSQPPASGYAQSDSASQRAPPTSYGTAAQPGFAPPPYGVPPTNQPAYGQAPPPYSSSYGAAYPQPQYSSEGNAGGATRGGYDSASAAQTAPQSGVAKASPKS 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12470418 12476581 - XM_039028577.1 Bhi04g00496 32105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00496 700 MobiDBLite consensus disorder prediction 529 549 - -
Bhi04g00496 700 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 230 309 IPR036612 GO:0003723
Bhi04g00496 700 CDD KH-I 237 302 - -
Bhi04g00496 700 SMART kh_6 141 214 IPR004087 GO:0003676
Bhi04g00496 700 SMART kh_6 233 307 IPR004087 GO:0003676
Bhi04g00496 700 MobiDBLite consensus disorder prediction 1 15 - -
Bhi04g00496 700 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 145 220 IPR036612 GO:0003723
Bhi04g00496 700 CDD KH-I 144 209 - -
Bhi04g00496 700 MobiDBLite consensus disorder prediction 45 59 - -
Bhi04g00496 700 ProSiteProfiles Type-1 KH domain profile. 142 209 - -
Bhi04g00496 700 MobiDBLite consensus disorder prediction 657 671 - -
Bhi04g00496 700 MobiDBLite consensus disorder prediction 309 329 - -
Bhi04g00496 700 MobiDBLite consensus disorder prediction 680 700 - -
Bhi04g00496 700 ProSiteProfiles Type-1 KH domain profile. 234 302 - -
Bhi04g00496 700 MobiDBLite consensus disorder prediction 631 646 - -
Bhi04g00496 700 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 87 688 - -
Bhi04g00496 700 MobiDBLite consensus disorder prediction 563 622 - -
Bhi04g00496 700 Gene3D K Homology domain, type 1 139 230 IPR036612 GO:0003723
Bhi04g00496 700 Gene3D K Homology domain, type 1 231 329 IPR036612 GO:0003723
Bhi04g00496 700 MobiDBLite consensus disorder prediction 344 520 - -
Bhi04g00496 700 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 87 688 - -
Bhi04g00496 700 MobiDBLite consensus disorder prediction 309 700 - -
Bhi04g00496 700 Pfam KH domain 145 211 IPR004088 GO:0003723
Bhi04g00496 700 Pfam KH domain 238 304 IPR004088 GO:0003723
Bhi04g00496 700 MobiDBLite consensus disorder prediction 1 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00496 K13210 FUBP; far upstream element-binding protein - csv:101216803 1167.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00496 Bhi-Chr4:12470418 Bhi05g01155 Bhi-Chr5:41151177 3.36E-89 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g62 . . . . . . . . Cmo05g00109 Cmo12g00572 . Cma05g00102 . Car12g00580 Sed08g1760 Cpe07g00553 . Bhi04g00496 Tan02g1648 Cmetu03g0500 . Hepe08g1383 . Lcy13g2177 . . . . . . . Cone4ag1652 . Cone17ag0917 Cone20ag0260 . . . . Blo17g00293 Blo18g00287 . Bda13g01608 Bpe14g00257 . . . . . . . Cma12g00631 . Car05g00374 Cpe11g00082 . . . . . . . . Cla08g01021 Cam08g1470 Cec08g1048 Cco08g1172 Clacu08g1174 . Cre08g0956 Lsi08g01575 Csa02g01846 Chy03g01638 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007208 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00496 Bhi_Chr04 FPKM 11.168398 11.679536 20.478916 21.478947 7.613902 8.406215 7.93736 18.859772 17.956633 17.841499