Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00501 TTTGAATAAAAAAAAACCTAAAGATGAGAAGAAAATGAGAAGCCCAAGAAGAAAAGAGAGAACCCCCATATTGCTTTGTATGATTTGTCTCTGCGTCTTTTCAACTGAGCACACACTGACTCTGAGTCATGGGGAGGTCCGGATATTGGCGACCCACCATGGGACCTCTCTCTGAATCCCTCTGTGAACCTCTCATAACCCTTTCTGCCCTTCTTCAATTTCACCAAATGGATTCGATTTTTGGCTCAATTTTGTTTTCTTTAATCATGGGTCGAAATTTTCTACTTAAAGAGAGAGAATTGGGGGGTGGTGTTGGGGTGTTTTGACCAACCCAAAACCCTTGAAACCCCTTTTTCTTCGTCATAATTGTTTGTTTCTTCGAATCGATTCCAATTTCTGGGTTATGAAATACACAAAAAGCAAACCCAAGTAGAGAAGAAAAAGTGTGGATTGGCAGCATTTCTCTGTTTGGGTTTGCAGGTAACCAAGCGAGGAACAGACCCCACGTCCCCAAATGTTCACACTCAACCATGTGGTAATGGATGGCTAAAAAGAAAGTGACTTCGTCTGAAAAATGGTGCTGAGAAGACCTGGCAGGAACAGGAGTTTCAACAGAGAGAATCCAGATATTTTGATTATGATGATTGCAGTGGATCAGATAATAAGAGGTTATGAGCAGGACAAAGGAGATGGCACAGAGAGGAAGGGCATGGGCCCTTTAAAGCCTGCAACAAAGACCAAAACGATATAGTAGTTCGAGTATGTTAACTTGTGCTGTTGCTTGGATTGTTGGAGAGTGACTTGATGAATGCTCTGGTGGATTGGATATGGCAAGCCCAAATTCTGTTGTAGCCGGATTTCCTATCCTTTTGACTCTGCGGGAATCTGGACGCTCTGCTACTAGTGCTGATAATCACATAGTTGATCAATTGGGATTTTTAGGTTCTCCAATGTCTACTGCCCTGCAACGAATCGATTTGGGGGATGCTTGTTTGAGTCCATCTGGTAATGTCGAGTTTCAAAATCAGTTGGCAGGAGAAATTCCTGTTACTTCTCTCTTTCAATCCACCTTTCTTGCTCCAGTAAATGATATTCGTGAAAATGCAAAAGATTCAGCATTTCCAGACCCTCAGTTTCAGCAATTAGAAACCTTTAGAACGTGCATCTTACACAGTTCCTCTAATGCTTCTAATTCTTCATTTGCAAGTTCTCTGATATGTGAAGGTGATGAGTCTCTTTGTAATGCAAATAACAAGTGGGAAAGTGATAGGTTTCATTGTATTCAGCAACTTTCTAGGGAGAATCCAGAAAGATCAGATTTCCAGACCATCTCGTCAATGGAACACCTGCATCAGAATGGCTGGATGCCATCTAACACTATGAACTCCAAGTTATGGAATGAGCTTTCTCTAAGCCTTGCCACATCCGAACCTGTCCTCAGTGGAGGAACCAATTTCCTGGACCAGTATCCACAGTTGACCTTTTCTGATTCTAATCAGCCTTGTTTGAACAGCACGGAATTAGCCTCGAACCTGAATTCAGGCAGCTCCAGGGACCTCCCTCTTAGTTATGGATGTGGTAGTCCTGTTCACCTTTCTCGTGCAATAGCAGGATCAAGATATCTTTCTGTCATTCAGGACGTACTCTCCCAAATTGCAAGATATCCACTGGAAAGTTCGGAGCAAGCTTGTCATTCAACTACTACTGTGGGGTTTGTGCCATCCCTGGATGATGCTACAATTGAATATGGTTCTGATGTAACTGTTAGATACAATTCTCAAATGGAGCCTGAATGTCAAAAACCATCGGTTGATGCCAAGAAATCCCATCTGTTGACTCTACTACAATTGATTGATGAGAGGTACACTCAATGCCTAGACGAAATTCATACCGTTACATCTGCGTTTCATGCCGCCACTGATTTGGACCCTTGCTTGCATACTCACTATACTCTCCAGACAATCACTTCAGTGTATAAAAATCTGAGGGAGAAAATTACCAATTGTATTTTTGCTATGGGTATGCATTCTAACACAATGTGCACCAAGGAGAAGGAAAAATCCTTTGAGGCAACATTCATCCAGAAGCAGTGGGCTCTACAGCAATTGAAAAGGAAAGATAATCAATTATGGAGGCCACAGAGAGGCTTGCCTGAGAAATCTGTCTCCGTTCTAAGGGCATGGATGTTTCAAAACTTTCTCCATCCGTATCCCAAGGACACAGAGAAGCATTTACTTGCAGTAAAAAGTGGATTAACTAGAAATCAGGTGTCTAATTGGTTCATCAATGCTCGTGTCCGGTTGTGGAAACCGATGATTGAAGAAATGTATGCTGAAATGAGCAGAAGAAAATCCAGTCAAAACGAGGAAGGAATCGAAAGAATTCATCGACCCAGATAAGCAATAGCAGCAAGAAGATGGTAGCTTGAACTGTGAATGTGATAAGCGGGATTGAGCATTGTATGGGGGACTTGAATAGATTAGAAAAGTGTATTGGACCGAATTCCAACTACATATTCTTTTTGGTAATCGAATTGAAACAATTAAACCTGAA 2553 41.79 MASPNSVVAGFPILLTLRESGRSATSADNHIVDQLGFLGSPMSTALQRIDLGDACLSPSGNVEFQNQLAGEIPVTSLFQSTFLAPVNDIRENAKDSAFPDPQFQQLETFRTCILHSSSNASNSSFASSLICEGDESLCNANNKWESDRFHCIQQLSRENPERSDFQTISSMEHLHQNGWMPSNTMNSKLWNELSLSLATSEPVLSGGTNFLDQYPQLTFSDSNQPCLNSTELASNLNSGSSRDLPLSYGCGSPVHLSRAIAGSRYLSVIQDVLSQIARYPLESSEQACHSTTTVGFVPSLDDATIEYGSDVTVRYNSQMEPECQKPSVDAKKSHLLTLLQLIDERYTQCLDEIHTVTSAFHAATDLDPCLHTHYTLQTITSVYKNLREKITNCIFAMGMHSNTMCTKEKEKSFEATFIQKQWALQQLKRKDNQLWRPQRGLPEKSVSVLRAWMFQNFLHPYPKDTEKHLLAVKSGLTRNQVSNWFINARVRLWKPMIEEMYAEMSRRKSSQNEEGIERIHRPR 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12570126 12575505 - XM_039028858.1 Bhi04g00501 32110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00501 523 SUPERFAMILY Homeodomain-like 436 504 IPR009057 -
Bhi04g00501 523 Pfam Associated with HOX 260 391 IPR006563 -
Bhi04g00501 523 PANTHER HOMEOBOX PROTEIN ATH1 6 521 - -
Bhi04g00501 523 Gene3D - 429 510 - -
Bhi04g00501 523 ProSiteProfiles 'Homeobox' domain profile. 432 495 IPR001356 GO:0003677
Bhi04g00501 523 SMART prehox3 254 392 IPR006563 -
Bhi04g00501 523 CDD homeodomain 435 496 IPR001356 GO:0003677
Bhi04g00501 523 MobiDBLite consensus disorder prediction 504 523 - -
Bhi04g00501 523 Pfam Homeobox KN domain 452 491 IPR008422 GO:0003677|GO:0006355
Bhi04g00501 523 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 521 - -
Bhi04g00501 523 SMART HOX_1 435 499 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00499 Bhi-Chr4:12570126 Bhi04g00501 Bhi-Chr4:12570126 0 dispersed
Bhi04g00501 Bhi-Chr4:12570126 Bhi04g00503 Bhi-Chr4:12570126 0 dispersed
Bhi04g00500 Bhi-Chr4:12570126 Bhi04g00501 Bhi-Chr4:12570126 0 tandem
Bhi04g00501 Bhi-Chr4:12570126 Bhi04g00502 Bhi-Chr4:12570126 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
885 PF07526 POX 6.00E-21 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00501 - - csv:101204223 854.358