Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00508 AAAACAATCCTCCATTTATACCTTATATATTATATTATGAAAGAATTGAGATTCCCTTTGAGACTTGAGAGAGAGAGAGAGAGAGATCAGAATAATATTTTGTAGAGAGAGAAAGATCAGAAATGGTGAGGAAATGCTCACACTGTGGAAATGTGGGTCACAATTCAAGAACTTGCACTTCTCAGAATCATAGAGGAACCAAATTTAAGCTATTTGGAGTTCAACTTCATAATGAACCAACTGCTTTGTTGAAGAAGACTATTAGCTTGGATTCTTTGCCTTCTTCTTCTTCTTCTTCTACTTCTTTATCTTCTTCTTCTTCTTCTGAAAAATTGTCAACTGGGTATCTCTCAGATGGCCTTATCACCAAAGCCCATGAAAGAAAAAAAGTAGGTGTTCCATGGAGCGAAGAGGAACATAGGGTGTTCCTAGTTGGGTTAGAAAAGCTTGGAAAAGGAGATTGGAGAGGAATTTCAAGGAAATTTGTAACTACAAGAACTCCGACTCAAGTGGCTAGTCATGCACAAAAGTACTTTCTTCGACTCACTACTCTCAACAAAAGAAAACAACGTCGTCCCAGCCTCTTTGATGCTGCTGCAGCAAGGGACAAATTGACAGTGCAAGTGGTTGAAAAAGGCATCAGCAATTTGAAACCAAGCAATAATAATATGCAACCTTCATCCAATATTTCCTTTGGGAATCCAAATCCTCCAATTCAAAATATTTCCAAATCAAATCTTTGCAATTGGTTTGGTCATGATGAAGATGAGCCATATTTCAAGTTTCAATCTTCAAGCTCAATTATGATCAACAATTTTCAAACAACAACCCATCATCATCATCAACCACCTGATTTGCAGCTAAGTTTGTCCACTCCAAAGCCAGTTGAACAAGTAGCTCAGTGAACATTATTATATATATATATTAATATTAGTATAGTTTGTACTTTTGAAGTGGAATAACAATGTTTCTTTTCTAATATGTTTATGTTCGTCATTATTGTATCATCAAAACTCACTTGTCCACAACCAAGTTGGGCTTTATTGATTATCGAAAATAAAATATTCTTAAACAAAA 1077 35.28 MVRKCSHCGNVGHNSRTCTSQNHRGTKFKLFGVQLHNEPTALLKKTISLDSLPSSSSSSTSLSSSSSSEKLSTGYLSDGLITKAHERKKVGVPWSEEEHRVFLVGLEKLGKGDWRGISRKFVTTRTPTQVASHAQKYFLRLTTLNKRKQRRPSLFDAAAARDKLTVQVVEKGISNLKPSNNNMQPSSNISFGNPNPPIQNISKSNLCNWFGHDEDEPYFKFQSSSSIMINNFQTTTHHHHQPPDLQLSLSTPKPVEQVAQ 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12653903 12656359 + XM_039028450.1 Bhi04g00508 32117

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00508 260 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
Bhi04g00508 260 MobiDBLite consensus disorder prediction 1 20 - -
Bhi04g00508 260 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 257 - -
Bhi04g00508 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 142 IPR017930 -
Bhi04g00508 260 MobiDBLite consensus disorder prediction 50 73 - -
Bhi04g00508 260 SMART sant 90 140 IPR001005 -
Bhi04g00508 260 ProSiteProfiles Zinc finger CCHC-type profile. 3 20 IPR001878 GO:0003676|GO:0008270
Bhi04g00508 260 PANTHER TRANSCRIPTION FACTOR KUA1 1 257 - -
Bhi04g00508 260 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 89 140 IPR006447 GO:0003677
Bhi04g00508 260 CDD SANT 93 138 IPR001005 -
Bhi04g00508 260 MobiDBLite consensus disorder prediction 235 260 - -
Bhi04g00508 260 ProSiteProfiles Myb-like domain profile. 93 138 IPR001005 -
Bhi04g00508 260 Gene3D - 92 145 - -
Bhi04g00508 260 SUPERFAMILY Homeodomain-like 88 142 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00508 - - - csv:101204468 343.969
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00508 Bhi-Chr4:12653903 Bhi09g00460 Bhi-Chr9:9834535 1.55E-43 dispersed
Bhi04g00508 Bhi-Chr4:12653903 Bhi04g00509 Bhi-Chr4:12653914 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g70 . . . . . . . . . Cmo12g00575 . . . Car12g00583 Sed08g1764 Cpe07g00556 . Bhi04g00508 Tan02g1642 Cmetu03g2033 . Hepe08g1387 . Lcy13g2180 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00635 . . . . . . . . . . . . . . . . . . Lsi08g01578 Csa02g01841 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001505 1 4 1 4 4 2 3 2 2 1 2 2 3 2 2 3 2 4 3 2 2 3 2 2 2 2 2 4 2 2 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
891 PF00249 Myb_DNA-binding 1.50E-10 CL0123 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00508 Bhi_Chr04 FPKM 10.219616 11.51687 0.0 0.0 1.709769 2.19425 1.962187 0.0 0.0 0.0