Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00541 CCATTGGGAAGTAAAAGGCATAAATCCTCTTTTCCTTTCTCTTTCTCTCTCCGTTCCGAGAAATCTGCTTACCTATTTTAAACATTTTTTTTAATTTAAAAAAAAAAAAGAAAAAAAAGAAAAAAAGTATTTGCTTGTATGTGAGGATGCGTATGATTAATGAAACGAAAATGTTTCGATCATAGGGAGCCTCCGATTCTGTTTGTTTCCTGAGAAAATTTGTGATTAATACTATTTTATGAAAGCCTCCGTGGTTGGTTCTGTTTTTTCTGGTTTGAATTGGATTGTCTACTTCTTCGTTATTTTGAATGATTTTGTGCGATGGTTGTTGTTTCTGCTAAGATCTTCGTCGAGGAAGTCGTTTTCGGAATTCTTATGACATAGGCGTTCAGTATTGATTTTAAAACGTTGAGCTTGTACCATGGATATTAGTGAGGTTGAAGAAAATTTATTTGCTGCAAGTGATGCCAAGCTACATGGAGGAATGTGCAAGACTCTTTCTGCCATATATTGTAAAGTACTATCAATTTTCCCTTCATTGGAAGCTGCACGACCTCGGAGCAAATCTGGTATCCAGGCATTATGTTCATTGCATGTAGCACTAGAAAAAGCCAAGAGTACTCTCCAACATTGTACAGAGAGTAGTAAACTTTACTTGGCCATAACTGGGGACTCTGTCCTGTCAAAGTTTGAAAAGGTAAAAAAAGCTCTACAAGATAGCCTTAAACGTGTTGAAGATATCGTTCCACAGTCAATTGGATACCAGGGACGAACATTTAACAACACTGTTGACAACAATGAACTTGAGGCTTTTCACCAGGCTGCTATTAGACTTGGAATAAACTCCTCAAGAGCAGCTCTTGCAGAAAGAAGAGCACTAAAGAAACTAATTGACCGGTCTCGCACTGAAGAGGACAAGAGGAAGGAATCAATTGTAGCATATCTTTTGCATCTCATGAGGAAGTACTCCAAGTTATTTAGAAGCGAGGTACCAGATGATAACGATTCACAGGGTTCTGGACCTTGTTCACCCACTGTTCAGAGCTCTCTTGAGGACAGTGGAGCTGGTGGAAATGGTCAAGCCTTTGAAAGGCAGCTAACAAAGATTGGTTCTTTTACTTCGAAGCCAAAAAATCGCAGATTGGAGCAGATTCCCCTTCCACCTGATGAGTTGAGGTGTCCTATATCATTGCAGCTTATGTATGATCCGGTCATAATTGCTTCCGGGCAAACATATGAAAGGATTTGCATTGAGAAGTGGTTAAGTGACGGCCATAACACCTGCCCAAAAACTCAACAAAAACTCTCTCATCTTTCATTGACACCGAATTACTGTGTTAAGGGCCTGATTGCAAACTGGTGTGAACAGTATGGAGTTCCTGTTCCTGATGGGCCTCCAGATAGTCTTGACCTCAATTACTGGAGGCTCGCGTTATCTGAAGAGTCTCTAAATGTGTCGCCTGTGGACTCTGTTGGTTCGTGTAAGTTGAAAGATGTTAAAGTTGTTCCACTAGATGAAAATTGTGTAACTGAGGAGATCAAAGGAAATTTAGTGGATGACAAGTCTGCTGAAGACCAAGAGTCCAATATAAATATGCTTGCTAGGTATGAACAGTATTTGAAAGTCTTAAATGAGGAATCTGACTTCAAGAAAAAGTCGGAGGTTGTGGAGCAAATTAGACTGTTGCTCAAGGATGATGAAGAGGCGAGGATATATATGGGAGCTAATGGATTTGTCCAGGGACTTCTACGCTACTTAGAGATAGCTGTGCAAGAACAAAATACCAAGGCTCAGGAAAGTGGAGCAATGGCTCTTTTCAACCTTGCTGTCAACAACGATAGGAACAAGGAAATAATGCTGGCAGAACGGTTGATTTCATTGTTGGAGGAAATGATTATGAACCCAAATTCCCATGGATATGCAACGGCCCTCTATCTCAATGTCTCCTGTCTGGAAGAAGCAAAATCTATTATCGGCTCAAGTTGTGCGGTCCCATTCTTGACTCAACTCCTCCATGCCAATACCGAAACGCTATGCAAGCTTGATGCACTTCACACACTTTACAATCTCTCAACTGTGCCCTCCAATATTCCCAACCTGGTTTCTTCTGGAATCATCAAGGGACTTCAATCCCTTCTTGCATCCCGTCTCGATCGAACATGGACCGAAAAGTGCATAGCCATCTTGATAAATTTGGCTTCAAGTGAATCAGGTAGAGATCAAATGTCATCTGCTCCAGAACTTATCGGTGGGTTGGCTGCAATATTAGACAATGGCGAACCCATTGAGCAGGAACAAGCAGTGGCTTGTCTCTTGATTCTGTGCAGTGGCAATGAGAGGTGCAGTGAGATGGTCCTTCAGGAAGGCGTAATTCCTGGGTTGGTGTCAATGTCTGTGAACGGGACAGCAAGAGGTAAGGAGAAGGCTCAAAAGCTTCTGATGTTGTTTAGGGAGCAACGACAACGGGAGTCACCGCCACCGACACCGACACCGACACCGACACCAATACCGACACTGATCGAGCGATCAGAGAGTAGTGGGACATCTATGCCTGTGGCGGAATCAAAGCCACTGTGCAAGTCAATCTCAAGAAGAAAAACAGGAAAGGCTCTTAGCTTTTTATGGAAAAGCAAAAGCTATTCAGTGTACCAATGCTAAAAAAGCTCATTGGTGTTGTAAATTTAATTTTATTTTTCTTCATTTTTTTTTTTTTTGGGCGGGGGGGGGGGGGGTTTCGTTTAATCTGAAAGATGAGATGTACAGGCCAGGTGTAATTAATTCGTGGAGTTTTGGCTTCTAATTTCCAGAGTCATTTGGTGATAGAAATACAAGCACCCATTTATCTCAAATTTCAGCCCTCAA 2863 41.67 MDISEVEENLFAASDAKLHGGMCKTLSAIYCKVLSIFPSLEAARPRSKSGIQALCSLHVALEKAKSTLQHCTESSKLYLAITGDSVLSKFEKVKKALQDSLKRVEDIVPQSIGYQGRTFNNTVDNNELEAFHQAAIRLGINSSRAALAERRALKKLIDRSRTEEDKRKESIVAYLLHLMRKYSKLFRSEVPDDNDSQGSGPCSPTVQSSLEDSGAGGNGQAFERQLTKIGSFTSKPKNRRLEQIPLPPDELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHNTCPKTQQKLSHLSLTPNYCVKGLIANWCEQYGVPVPDGPPDSLDLNYWRLALSEESLNVSPVDSVGSCKLKDVKVVPLDENCVTEEIKGNLVDDKSAEDQESNINMLARYEQYLKVLNEESDFKKKSEVVEQIRLLLKDDEEARIYMGANGFVQGLLRYLEIAVQEQNTKAQESGAMALFNLAVNNDRNKEIMLAERLISLLEEMIMNPNSHGYATALYLNVSCLEEAKSIIGSSCAVPFLTQLLHANTETLCKLDALHTLYNLSTVPSNIPNLVSSGIIKGLQSLLASRLDRTWTEKCIAILINLASSESGRDQMSSAPELIGGLAAILDNGEPIEQEQAVACLLILCSGNERCSEMVLQEGVIPGLVSMSVNGTARGKEKAQKLLMLFREQRQRESPPPTPTPTPTPIPTLIERSESSGTSMPVAESKPLCKSISRRKTGKALSFLWKSKSYSVYQC 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13269862 13275425 + XM_039029266.1 Bhi04g00541 32150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00541 745 MobiDBLite consensus disorder prediction 192 215 - -
Bhi04g00541 745 Pfam U-box domain 248 316 IPR003613 GO:0004842|GO:0016567
Bhi04g00541 745 SUPERFAMILY RING/U-box 247 323 - -
Bhi04g00541 745 MobiDBLite consensus disorder prediction 697 712 - -
Bhi04g00541 745 Gene3D - 370 684 IPR011989 -
Bhi04g00541 745 PANTHER U BOX DOMAIN-CONTAINING 1 115 - -
Bhi04g00541 745 PANTHER U BOX DOMAIN-CONTAINING 115 718 - -
Bhi04g00541 745 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 115 - -
Bhi04g00541 745 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 115 718 - -
Bhi04g00541 745 Gene3D - 10 105 IPR036537 GO:0007166
Bhi04g00541 745 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 319 IPR013083 -
Bhi04g00541 745 CDD RING-Ubox_PUB 251 293 IPR045210 -
Bhi04g00541 745 SUPERFAMILY ARM repeat 397 664 IPR016024 -
Bhi04g00541 745 Coils Coil 87 107 - -
Bhi04g00541 745 SMART Ubox_2 250 313 IPR003613 GO:0004842|GO:0016567
Bhi04g00541 745 MobiDBLite consensus disorder prediction 678 717 - -
Bhi04g00541 745 ProSiteProfiles U-box domain profile. 246 320 IPR003613 GO:0004842|GO:0016567
Bhi04g00541 745 MobiDBLite consensus disorder prediction 189 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00541 Bhi-Chr4:13269862 Bhi04g00545 Bhi-Chr4:13269863 0 dispersed
Bhi04g00541 Bhi-Chr4:13269862 Bhi04g00542 Bhi-Chr4:13269862 0 tandem
Bhi04g00541 Bhi-Chr4:13269862 Bhi07g01900 Bhi-Chr7:50951887 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00541 - - csv:101220593 1322.76