Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00543 CCATTGGGAAGTAAAAGGCATAAATCCTCTTTTCCTTTCTCTTTCTCTCTCCGTTCCGAGAAATCTGCTTACCTATTTTAAACATTTTTTTTAATTTAAAAAAAAAAAAGAAAAAAAAGAAAAAAAGTATTTGCTTGTATGTGAGGATGCGTATGATTAATGAAACGAAAATGTTTCGATCATAGGGAGCCTCCGATTCTGTTTGTTTCCTGAGAAAATTTGTGATTAATACTATTTTATGAAAGCCTCCGTGGTTGGTTCTGTTTTTTCTGGTTTGAATTGGATTGTCTACTTCTTCGTTATTTTGAATGATTTTGTGCGATGGTTGTTGTTTCTGCTAAGATCTTCGTCGAGGAAGTCGTTTTCGGAATTCTTATGACATAGGCGTTCAGTATTGATTTTAAAACGTTGAGCTTGTACCATGGATATTAGTGAGGTTGAAGAAAATTTATTTGCTGCAAGTGATGCCAAGGCCATAACTGGGGACTCTGTCCTGTCAAAGTTTGAAAAGGTAAAAAAAGCTCTACAAGATAGCCTTAAACGTGTTGAAGATATCGTTCCACAGTCAATTGGATACCAGGGACGAACATTTAACAACACTGTTGACAACAATGAACTTGAGGCTTTTCACCAGGCTGCTATTAGACTTGGAATAAACTCCTCAAGAGCAGCTCTTGCAGAAAGAAGAGCACTAAAGAAACTAATTGACCGGTCTCGCACTGAAGAGGACAAGAGGAAGGAATCAATTGTAGCATATCTTTTGCATCTCATGAGGAAGTACTCCAAGTTATTTAGAAGCGAGGTACCAGATGATAACGATTCACAGGGTTCTGGACCTTGTTCACCCACTGTTCAGAGCTCTCTTGAGGACAGTGGAGCTGGTGGAAATGGTCAAGCCTTTGAAAGGCAGCTAACAAAGATTGGTTCTTTTACTTCGAAGCCAAAAAATCGCAGATTGGAGCAGATTCCCCTTCCACCTGATGAGTTGAGGTGTCCTATATCATTGCAGCTTATGTATGATCCGGTCATAATTGCTTCCGGGCAAACATATGAAAGGATTTGCATTGAGAAGTGGTTAAGTGACGGCCATAACACCTGCCCAAAAACTCAACAAAAACTCTCTCATCTTTCATTGACACCGAATTACTGTGTTAAGGGCCTGATTGCAAACTGGTGTGAACAGTATGGAGTTCCTGTTCCTGATGGGCCTCCAGATAGTCTTGACCTCAATTACTGGAGGCTCGCGTTATCTGAAGAGTCTCTAAATGTGTCGCCTGTGGACTCTGTTGGTTCGTGTAAGTTGAAAGATGTTAAAGTTGTTCCACTAGATGAAAATTGTGTAACTGAGGAGATCAAAGGAAATTTAGTGGATGACAAGTCTGCTGAAGACCAAGAGTCCAATATAAATATGCTTGCTAGGTATGAACAGTATTTGAAAGTCTTAAATGAGGAATCTGACTTCAAGAAAAAGTCGGAGGTTGTGGAGCAAATTAGACTGTTGCTCAAGGATGATGAAGAGGCGAGGATATATATGGGAGCTAATGGATTTGTCCAGGGACTTCTACGCTACTTAGAGATAGCTGTGCAAGAACAAAATACCAAGGCTCAGGAAAGTGGAGCAATGGCTCTTTTCAACCTTGCTGTCAACAACGATAGGAACAAGGAAATAATGCTGGCAGAACGGTTGATTTCATTGTTGGAGGAAATGATTATGAACCCAAATTCCCATGGATATGCAACGGCCCTCTATCTCAATGTCTCCTGTCTGGAAGAAGCAAAATCTATTATCGGCTCAAGTTGTGCGGTCCCATTCTTGACTCAACTCCTCCATGCCAATACCGAAACGCTATGCAAGCTTGATGCACTTCACACACTTTACAATCTCTCAACTGTGCCCTCCAATATTCCCAACCTGGTTTCTTCTGGAATCATCAAGGGACTTCAATCCCTTCTTGCATCCCGTCTCGATCGAACATGGACCGAAAAGTGCATAGCCATCTTGATAAATTTGGCTTCAAGTGAATCAGGTAGAGATCAAATGTCATCTGCTCCAGAACTTATCGGTGGGTTGGCTGCAATATTAGACAATGGCGAACCCATTGAGCAGGAACAAGCAGTGGCTTGTCTCTTGATTCTGTGCAGTGGCAATGAGAGGTGCAGTGAGATGGTCCTTCAGGAAGGCGTAATTCCTGGGTTGGTGTCAATGTCTGTGAACGGGACAGCAAGAGGTAAGGAGAAGGCTCAAAAGCTTCTGATGTTGTTTAGGGAGCAACGACAACGGGAGTCACCGCCACCGACACCGACACCGACACCGACACCAATACCGACACTGATCGAGCGATCAGAGAGTAGTGGGACATCTATGCCTGTGGCGGAATCAAAGCCACTGTGCAAGTCAATCTCAAGAAGAAAAACAGGAAAGGCTCTTAGCTTTTTATGGAAAAGCAAAAGCTATTCAGTGTACCAATGCTAAAAAAGCTCATTGGTGTTGTAAATTTAATTTTATTTTTCTTCATTTTTTTTTTTTTTGGGCGGGGGGGGGGGGGGTTTCGTTTAATCTGAAAGATGAGATGTACAGGCCAGGTGTAATTAATTCGTGGAGTTTTGGCTTCTAATTTCCAGAGTCATTTGGTGATAGAAATACAAGCACCCATTTATCTCAAATTTCAGCCCTCAA 2677 41.76 MDISEVEENLFAASDAKAITGDSVLSKFEKVKKALQDSLKRVEDIVPQSIGYQGRTFNNTVDNNELEAFHQAAIRLGINSSRAALAERRALKKLIDRSRTEEDKRKESIVAYLLHLMRKYSKLFRSEVPDDNDSQGSGPCSPTVQSSLEDSGAGGNGQAFERQLTKIGSFTSKPKNRRLEQIPLPPDELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHNTCPKTQQKLSHLSLTPNYCVKGLIANWCEQYGVPVPDGPPDSLDLNYWRLALSEESLNVSPVDSVGSCKLKDVKVVPLDENCVTEEIKGNLVDDKSAEDQESNINMLARYEQYLKVLNEESDFKKKSEVVEQIRLLLKDDEEARIYMGANGFVQGLLRYLEIAVQEQNTKAQESGAMALFNLAVNNDRNKEIMLAERLISLLEEMIMNPNSHGYATALYLNVSCLEEAKSIIGSSCAVPFLTQLLHANTETLCKLDALHTLYNLSTVPSNIPNLVSSGIIKGLQSLLASRLDRTWTEKCIAILINLASSESGRDQMSSAPELIGGLAAILDNGEPIEQEQAVACLLILCSGNERCSEMVLQEGVIPGLVSMSVNGTARGKEKAQKLLMLFREQRQRESPPPTPTPTPTPIPTLIERSESSGTSMPVAESKPLCKSISRRKTGKALSFLWKSKSYSVYQC 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13269862 13275425 + XM_039029270.1 Bhi04g00543 32152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00543 683 Coils Coil 25 45 - -
Bhi04g00543 683 MobiDBLite consensus disorder prediction 616 655 - -
Bhi04g00543 683 ProSiteProfiles U-box domain profile. 184 258 IPR003613 GO:0004842|GO:0016567
Bhi04g00543 683 SUPERFAMILY ARM repeat 335 602 IPR016024 -
Bhi04g00543 683 SUPERFAMILY RING/U-box 185 261 - -
Bhi04g00543 683 MobiDBLite consensus disorder prediction 130 153 - -
Bhi04g00543 683 MobiDBLite consensus disorder prediction 635 650 - -
Bhi04g00543 683 SMART Ubox_2 188 251 IPR003613 GO:0004842|GO:0016567
Bhi04g00543 683 Pfam U-box domain 186 254 IPR003613 GO:0004842|GO:0016567
Bhi04g00543 683 Gene3D - 308 622 IPR011989 -
Bhi04g00543 683 MobiDBLite consensus disorder prediction 127 156 - -
Bhi04g00543 683 CDD RING-Ubox_PUB 189 231 IPR045210 -
Bhi04g00543 683 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 257 IPR013083 -
Bhi04g00543 683 PANTHER U BOX DOMAIN-CONTAINING 53 627 - -
Bhi04g00543 683 PANTHER U BOX DOMAIN-CONTAINING 18 54 - -
Bhi04g00543 683 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 7 18 54 - -
Bhi04g00543 683 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 7 53 627 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00543 Bhi-Chr4:13269862 Bhi04g00548 Bhi-Chr4:13270144 0 dispersed
Bhi04g00542 Bhi-Chr4:13269862 Bhi04g00543 Bhi-Chr4:13269862 0 tandem
Bhi04g00543 Bhi-Chr4:13269862 Bhi04g00544 Bhi-Chr4:13269862 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00543 - - csv:101220593 1174.46