Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00548 TTCTGTTTCAAATCTAGTTTTCTTTACTCTCCATCCCCTGATTTTCCCATTCTCTTACCTTCGATTCTTTATTATTTTCCATTTTCCCTTTTCCAATTCGTTTCATTCATTTTCGTTAAGATTTCTGGCTGATCGTTCTTTTCTACCGGTTCCTGTAATCCAGATGACATAGGCGTTCAGTATTGATTTTAAAACGTTGAGCTTGTACCATGGATATTAGTGAGGTTGAAGAAAATTTATTTGCTGCAAGTGATGCCAAGGCCATAACTGGGGACTCTGTCCTGTCAAAGTTTGAAAAGGTAAAAAAAGCTCTACAAGATAGCCTTAAACGTGTTGAAGATATCGTTCCACAGTCAATTGGATACCAGGTTCAGGAGATTATGAAGGAACTGGCCAGTACTCAATTTTTCCTGGATCCTTTAGAGAAGCAAGTTGGTGATGACATTATTTTATTGCTCCAACAGGGACGAACATTTAACAACACTGTTGACAACAATGAACTTGAGGCTTTTCACCAGGCTGCTATTAGACTTGGAATAAACTCCTCAAGAGCAGCTCTTGCAGAAAGAAGAGCACTAAAGAAACTAATTGACCGGTCTCGCACTGAAGAGGACAAGAGGAAGGAATCAATTGTAGCATATCTTTTGCATCTCATGAGGAAGTACTCCAAGTTATTTAGAAGCGAGGTACCAGATGATAACGATTCACAGGGTTCTGGACCTTGTTCACCCACTGTTCAGAGCTCTCTTGAGGACAGTGGAGCTGGTGGAAATGGTCAAGCCTTTGAAAGGCAGCTAACAAAGATTGGTTCTTTTACTTCGAAGCCAAAAAATCGCAGATTGGAGCAGATTCCCCTTCCACCTGATGAGTTGAGGTGTCCTATATCATTGCAGCTTATGTATGATCCGGTCATAATTGCTTCCGGGCAAACATATGAAAGGATTTGCATTGAGAAGTGGTTAAGTGACGGCCATAACACCTGCCCAAAAACTCAACAAAAACTCTCTCATCTTTCATTGACACCGAATTACTGTGTTAAGGGCCTGATTGCAAACTGGTGTGAACAGTATGGAGTTCCTGTTCCTGATGGGCCTCCAGATAGTCTTGACCTCAATTACTGGAGGCTCGCGTTATCTGAAGAGTCTCTAAATGTGTCGCCTGTGGACTCTGTTGGTTCGTGTAAGTTGAAAGATGTTAAAGTTGTTCCACTAGATGAAAATTGTGTAACTGAGGAGATCAAAGGAAATTTAGTGGATGACAAGTCTGCTGAAGACCAAGAGTCCAATATAAATATGCTTGCTAGGTATGAACAGTATTTGAAAGTCTTAAATGAGGAATCTGACTTCAAGAAAAAGTCGGAGGTTGTGGAGCAAATTAGACTGTTGCTCAAGGATGATGAAGAGGCGAGGATATATATGGGAGCTAATGGATTTGTCCAGGGACTTCTACGCTACTTAGAGATAGCTGTGCAAGAACAAAATACCAAGGCTCAGGAAAGTGGAGCAATGGCTCTTTTCAACCTTGCTGTCAACAACGATAGGAACAAGGAAATAATGCTGGCAGAACGGTTGATTTCATTGTTGGAGGAAATGATTATGAACCCAAATTCCCATGGATATGCAACGGCCCTCTATCTCAATGTCTCCTGTCTGGAAGAAGCAAAATCTATTATCGGCTCAAGTTGTGCGGTCCCATTCTTGACTCAACTCCTCCATGCCAATACCGAAACGCTATGCAAGCTTGATGCACTTCACACACTTTACAATCTCTCAACTGTGCCCTCCAATATTCCCAACCTGGTTTCTTCTGGAATCATCAAGGGACTTCAATCCCTTCTTGCATCCCGTCTCGATCGAACATGGACCGAAAAGTGCATAGCCATCTTGATAAATTTGGCTTCAAGTGAATCAGGTAGAGATCAAATGTCATCTGCTCCAGAACTTATCGGTGGGTTGGCTGCAATATTAGACAATGGCGAACCCATTGAGCAGGAACAAGCAGTGGCTTGTCTCTTGATTCTGTGCAGTGGCAATGAGAGGTGCAGTGAGATGGTCCTTCAGGAAGGCGTAATTCCTGGGTTGGTGTCAATGTCTGTGAACGGGACAGCAAGAGGTAAGGAGAAGGCTCAAAAGCTTCTGATGTTGTTTAGGGAGCAACGACAACGGGAGTCACCGCCACCGACACCGACACCGACACCGACACCAATACCGACACTGATCGAGCGATCAGAGAGTAGTGGGACATCTATGCCTGTGGCGGAATCAAAGCCACTGTGCAAGTCAATCTCAAGAAGAAAAACAGGAAAGGCTCTTAGCTTTTTATGGAAAAGCAAAAGCTATTCAGTGTACCAATGCTAAAAAAGCTCATTGGTGTTGTAAATTTAATTTTATTTTTCTTCATTTTTTTTTTTTTTGGGCGGGGGGGGGGGGGGTTTCGTTTAATCTGAAAGATGAGATGTACAGGCCAGGTGTAATTAATTCGTGGAGTTTTGGCTTCTAATTTCCAGAGTCATTTGGTGATAGAAATACAAGCACCCATTTATCTCAAATTTCAGCCCTCAA 2561 42.52 MDISEVEENLFAASDAKAITGDSVLSKFEKVKKALQDSLKRVEDIVPQSIGYQVQEIMKELASTQFFLDPLEKQVGDDIILLLQQGRTFNNTVDNNELEAFHQAAIRLGINSSRAALAERRALKKLIDRSRTEEDKRKESIVAYLLHLMRKYSKLFRSEVPDDNDSQGSGPCSPTVQSSLEDSGAGGNGQAFERQLTKIGSFTSKPKNRRLEQIPLPPDELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHNTCPKTQQKLSHLSLTPNYCVKGLIANWCEQYGVPVPDGPPDSLDLNYWRLALSEESLNVSPVDSVGSCKLKDVKVVPLDENCVTEEIKGNLVDDKSAEDQESNINMLARYEQYLKVLNEESDFKKKSEVVEQIRLLLKDDEEARIYMGANGFVQGLLRYLEIAVQEQNTKAQESGAMALFNLAVNNDRNKEIMLAERLISLLEEMIMNPNSHGYATALYLNVSCLEEAKSIIGSSCAVPFLTQLLHANTETLCKLDALHTLYNLSTVPSNIPNLVSSGIIKGLQSLLASRLDRTWTEKCIAILINLASSESGRDQMSSAPELIGGLAAILDNGEPIEQEQAVACLLILCSGNERCSEMVLQEGVIPGLVSMSVNGTARGKEKAQKLLMLFREQRQRESPPPTPTPTPTPIPTLIERSESSGTSMPVAESKPLCKSISRRKTGKALSFLWKSKSYSVYQC 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13270144 13275425 + XM_039029269.1 Bhi04g00548 32157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00548 715 Coils Coil 25 45 - -
Bhi04g00548 715 MobiDBLite consensus disorder prediction 648 687 - -
Bhi04g00548 715 ProSiteProfiles U-box domain profile. 216 290 IPR003613 GO:0004842|GO:0016567
Bhi04g00548 715 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 18 688 - -
Bhi04g00548 715 MobiDBLite consensus disorder prediction 162 185 - -
Bhi04g00548 715 SMART Ubox_2 220 283 IPR003613 GO:0004842|GO:0016567
Bhi04g00548 715 Pfam U-box domain 218 286 IPR003613 GO:0004842|GO:0016567
Bhi04g00548 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 289 IPR013083 -
Bhi04g00548 715 SUPERFAMILY ARM repeat 367 635 IPR016024 -
Bhi04g00548 715 MobiDBLite consensus disorder prediction 159 188 - -
Bhi04g00548 715 MobiDBLite consensus disorder prediction 667 682 - -
Bhi04g00548 715 PANTHER U BOX DOMAIN-CONTAINING 18 688 - -
Bhi04g00548 715 SUPERFAMILY RING/U-box 217 293 - -
Bhi04g00548 715 CDD RING-Ubox_PUB 221 263 IPR045210 -
Bhi04g00548 715 Gene3D - 340 654 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00543 Bhi-Chr4:13269862 Bhi04g00548 Bhi-Chr4:13270144 0 dispersed
Bhi04g00544 Bhi-Chr4:13269862 Bhi04g00548 Bhi-Chr4:13270144 0 dispersed
Bhi04g00548 Bhi-Chr4:13270144 Bhi07g01900 Bhi-Chr7:50951887 0 dispersed
Bhi04g00547 Bhi-Chr4:13269863 Bhi04g00548 Bhi-Chr4:13270144 0 tandem
Bhi04g00548 Bhi-Chr4:13270144 Bhi04g00549 Bhi-Chr4:13270145 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00548 - - csv:101220593 1249.19