Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00549 TCTGTTTCAAATCTAGTTTTCTTTACTCTCCATCCCCTGATTTTCCCATTCTCTTACCTTCGATTCTTTATTATTTTCCATTTTCCCTTTTCCAATTCGTTTCATTCATTTTCGTTAAGATTTCTGGCTGATCGTTCTTTTCTACCGGTTCCTGTAATCCAGATGACATAGGCGTTCAGTATTGATTTTAAAACGTTGAGCTTGTACCATGGATATTAGTGAGGTTGAAGAAAATTTATTTGCTGCAAGTGATGCCAAGCTACATGGAGGAATGTGCAAGACTCTTTCTGCCATATATTGTAAAGTACTATCAATTTTCCCTTCATTGGAAGCTGCACGACCTCGGAGCAAATCTGGTATCCAGGCATTATGTTCATTGCATGTAGCACTAGAAAAAGCCAAGAGTACTCTCCAACATTGTACAGAGAGTAGTAAACTTTACTTGGCCATAACTGGGGACTCTGTCCTGTCAAAGTTTGAAAAGGTAAAAAAAGCTCTACAAGATAGCCTTAAACGTGTTGAAGATATCGTTCCACAGTCAATTGGATACCAGGTTCAGGAGATTATGAAGGAACTGGCCAGTACTCAATTTTTCCTGGATCCTTTAGAGAAGCAAGTTGGTGATGACATTATTTTATTGCTCCAACAGGGACGAACATTTAACAACACTGTTGACAACAATGAACTTGAGGCTTTTCACCAGGCTGCTATTAGACTTGGAATAAACTCCTCAAGAGCAGCTCTTGCAGAAAGAAGAGCACTAAAGAAACTAATTGACCGGTCTCGCACTGAAGAGGACAAGAGGAAGGAATCAATTGTAGCATATCTTTTGCATCTCATGAGGAAGTACTCCAAGTTATTTAGAAGCGAGGTACCAGATGATAACGATTCACAGGGTTCTGGACCTTGTTCACCCACTGTTCAGAGCTCTCTTGAGGACAGTGGAGCTGGTGGAAATGGTCAAGCCTTTGAAAGGCAGCTAACAAAGATTGGTTCTTTTACTTCGAAGCCAAAAAATCGCAGATTGGAGCAGATTCCCCTTCCACCTGATGAGTTGAGGTGTCCTATATCATTGCAGCTTATGTATGATCCGGTCATAATTGCTTCCGGGCAAACATATGAAAGGATTTGCATTGAGAAGTGGTTAAGTGACGGCCATAACACCTGCCCAAAAACTCAACAAAAACTCTCTCATCTTTCATTGACACCGAATTACTGTGTTAAGGGCCTGATTGCAAACTGGTGTGAACAGTATGGAGTTCCTGTTCCTGATGGGCCTCCAGATAGTCTTGACCTCAATTACTGGAGGCTCGCGTTATCTGAAGAGTCTCTAAATGTGTCGCCTGTGGACTCTGTTGGTTCGTGTAAGTTGAAAGATGTTAAAGTTGTTCCACTAGATGAAAATTGTGTAACTGAGGAGATCAAAGGAAATTTAGTGGATGACAAGTCTGCTGAAGACCAAGAGTCCAATATAAATATGCTTGCTAGGTATGAACAGTATTTGAAAGTCTTAAATGAGGAATCTGACTTCAAGAAAAAGTCGGAGGTTGTGGAGCAAATTAGACTGTTGCTCAAGGATGATGAAGAGGCGAGGATATATATGGGAGCTAATGGATTTGTCCAGGGACTTCTACGCTACTTAGAGATAGCTGTGCAAGAACAAAATACCAAGGCTCAGGAAAGTGGAGCAATGGCTCTTTTCAACCTTGCTGTCAACAACGATAGGAACAAGGAAATAATGCTGGCAGAACGGTTGATTTCATTGTTGGAGGAAATGATTATGAACCCAAATTCCCATGGATATGCAACGGCCCTCTATCTCAATGTCTCCTGTCTGGAAGAAGCAAAATCTATTATCGGCTCAAGTTGTGCGGTCCCATTCTTGACTCAACTCCTCCATGCCAATACCGAAACGCTATGCAAGCTTGATGCACTTCACACACTTTACAATCTCTCAACTGTGCCCTCCAATATTCCCAACCTGGTTTCTTCTGGAATCATCAAGGGACTTCAATCCCTTCTTGCATCCCGTCTCGATCGAACATGGACCGAAAAGTGCATAGCCATCTTGATAAATTTGGCTTCAAGTGAATCAGGTAGAGATCAAATGTCATCTGCTCCAGAACTTATCGGTGGGTTGGCTGCAATATTAGACAATGGCGAACCCATTGAGCAGGAACAAGCAGTGGCTTGTCTCTTGATTCTGTGCAGTGGCAATGAGAGGTGCAGTGAGATGGTCCTTCAGGAAGGCGTAATTCCTGGGTTGGTGTCAATGTCTGTGAACGGGACAGCAAGAGGTAAGGAGAAGGCTCAAAAGCTTCTGATGTTGTTTAGGGAGCAACGACAACGGGAGTCACCGCCACCGACACCGACACCGACACCGACACCAATACCGACACTGATCGAGCGATCAGAGAGTAGTGGGACATCTATGCCTGTGGCGGAATCAAAGCCACTGTGCAAGTCAATCTCAAGAAGAAAAACAGGAAAGGCTCTTAGCTTTTTATGGAAAAGCAAAAGCTATTCAGTGTACCAATGCTAAAAAAGCTCATTGGTGTTGTAAATTTAATTTTATTTTTCTTCATTTTTTTTTTTTTTGGGCGGGGGGGGGGGGGGTTTCGTTTAATCTGAAAGATGAGATGTACAGGCCAGGTGTAATTAATTCGTGGAGTTTTGGCTTCTAATTTCCAGAGTCATTTGGTGATAGAAATACAAGCACCCATTTATCTCAAATTTCAGCCCTCAA 2746 42.39 MDISEVEENLFAASDAKLHGGMCKTLSAIYCKVLSIFPSLEAARPRSKSGIQALCSLHVALEKAKSTLQHCTESSKLYLAITGDSVLSKFEKVKKALQDSLKRVEDIVPQSIGYQVQEIMKELASTQFFLDPLEKQVGDDIILLLQQGRTFNNTVDNNELEAFHQAAIRLGINSSRAALAERRALKKLIDRSRTEEDKRKESIVAYLLHLMRKYSKLFRSEVPDDNDSQGSGPCSPTVQSSLEDSGAGGNGQAFERQLTKIGSFTSKPKNRRLEQIPLPPDELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHNTCPKTQQKLSHLSLTPNYCVKGLIANWCEQYGVPVPDGPPDSLDLNYWRLALSEESLNVSPVDSVGSCKLKDVKVVPLDENCVTEEIKGNLVDDKSAEDQESNINMLARYEQYLKVLNEESDFKKKSEVVEQIRLLLKDDEEARIYMGANGFVQGLLRYLEIAVQEQNTKAQESGAMALFNLAVNNDRNKEIMLAERLISLLEEMIMNPNSHGYATALYLNVSCLEEAKSIIGSSCAVPFLTQLLHANTETLCKLDALHTLYNLSTVPSNIPNLVSSGIIKGLQSLLASRLDRTWTEKCIAILINLASSESGRDQMSSAPELIGGLAAILDNGEPIEQEQAVACLLILCSGNERCSEMVLQEGVIPGLVSMSVNGTARGKEKAQKLLMLFREQRQRESPPPTPTPTPTPIPTLIERSESSGTSMPVAESKPLCKSISRRKTGKALSFLWKSKSYSVYQC 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13270145 13275425 + XM_039029264.1 Bhi04g00549 32158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00549 777 MobiDBLite consensus disorder prediction 224 247 - -
Bhi04g00549 777 PANTHER U BOX DOMAIN-CONTAINING 1 750 - -
Bhi04g00549 777 Pfam U-box domain 280 348 IPR003613 GO:0004842|GO:0016567
Bhi04g00549 777 Gene3D - 10 105 IPR036537 GO:0007166
Bhi04g00549 777 MobiDBLite consensus disorder prediction 729 744 - -
Bhi04g00549 777 CDD RING-Ubox_PUB 283 325 IPR045210 -
Bhi04g00549 777 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 750 - -
Bhi04g00549 777 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Bhi04g00549 777 SUPERFAMILY RING/U-box 279 355 - -
Bhi04g00549 777 Coils Coil 87 107 - -
Bhi04g00549 777 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 351 IPR013083 -
Bhi04g00549 777 Gene3D - 402 716 IPR011989 -
Bhi04g00549 777 MobiDBLite consensus disorder prediction 710 749 - -
Bhi04g00549 777 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Bhi04g00549 777 MobiDBLite consensus disorder prediction 221 250 - -
Bhi04g00549 777 SUPERFAMILY ARM repeat 429 696 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00546 Bhi-Chr4:13269863 Bhi04g00549 Bhi-Chr4:13270145 0 dispersed
Bhi04g00547 Bhi-Chr4:13269863 Bhi04g00549 Bhi-Chr4:13270145 0 dispersed
Bhi04g00549 Bhi-Chr4:13270145 Bhi07g01900 Bhi-Chr7:50951887 0 dispersed
Bhi04g00548 Bhi-Chr4:13270144 Bhi04g00549 Bhi-Chr4:13270145 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00549 - - csv:101220593 1397.49