Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00601 CAGGATTCTTGAAGCCTTTTTCTTCACCATCACCAAACTCTGAATCCTGTCTTTGCTTTTCTCTGCTTCTTCACACACAAAAAGAGGGAAGAAACAGAGAGCTATGGAAAATCCCATTATTTTTCTTTTAATAATAACATTTTTCAGTGTTCTTCTCCAAATATGGTCTGTTTCATCTTCTCCAATAGCCGATCCAGAAGTTGTTGTCCAAGAAGTTCTAACGAGCATCAACAATGCAACAGCAAGAAGGAATTTGGGGTTCCTATCCTGTGGAACCGGTAACCCAATAGACGACTGCTGGCGGTGCGATCCCAATTGGGAAAACAACCGGAAGCGGCTAGCCGACTGCGCCATTGGGTTTGGAAAACGAGCCATCGGCGGCAAAAACGGCAAATACTACGTAGTCACCGACCCCTCCGACAAGGACGTGGTGAACCCAAAACCCGGCACTCTTCGCCACGCCGTAATCCAAAAAGAACCCTTATGGATCATCTTCAAACGCGACATGGTCATCAAATTGAAGGCAGAGCTTCTGATGAACTCTTTCAAAACCATCGACGGCCGTGGCGCCTCCGTCCACATCGCCGGCGGGCCTTGTATTACCATTCAATTTGTGACCAACATTATAATCCACGGCATCAACATTCACGATTGCAAGCAAGGTGGGAATACGTACGTCAGAGACTCGCCGGAGCATTACGGTTGGAGGACTGTGTCGGACGGCGATGGAGTTTCGATATTTGGGGGCAGCCATATTTGGGTTGACCATTGCTCTTTGTCTAATTGCCGTGATGGGTTGATTGATGCCATTCATGGATCGACGGCTATAACTCTTTCAAACAATTACATGACCCACCATAATAAAGTTATGCTTTTAGGACATAGTGATTCCTACACTCAAGACAAGAACATGCAAGTCACCATTGCTTTTAACCATTTTGGCGAAGGCCTTGTGCAAAGAATGCCACGATGTCGTCATGGGTATTTCCATGTGGTGAATAATGACTATACTCATTGGATAATGTACGCAATTGGTGGAAGTGCATCTCCTACTATCAATAGTCAAGGAAATCGATACCTTGCTCCCAATAACAAAGATAGAAAAGAGGTGACAAAGCGAGAGGATGCACCACAAAGCAAATGGAAGAACTGGAATTGGAGGTCGGATGGAGATTTGATGTTGAACGGAGCATTCTTCACAAGGTCCGGTGCTGGAGCGTCATCTAGCTACGCAAGAGCATCGAGCTTGAGTGCAAAATCGTCGTCACTAGTGAGTTCGATGACAGCGGGAGCAGGGGTGCTACGGTGTCGAAAAGGTTCTCGATGTTAGTCGAACCATCGTCAGACAATGACGAAGATATATATGGACCAAAATGACAGTATATTGAAGTATATTAGCAAGAAGAGATTTGAGGATCTTCTTGTATACTAATTTTTACATTTGTCTTACTTGATTGGTCACAATTGAAAGGCTTTCTTTTTTTTTTTTTTTTTTTAAGAAAAAGTTGTATTTCAGAGTGAGTGACCCACCATTTGTAATTCTGTCTAATTACAATATAATAT 1563 43.63 MENPIIFLLIITFFSVLLQIWSVSSSPIADPEVVVQEVLTSINNATARRNLGFLSCGTGNPIDDCWRCDPNWENNRKRLADCAIGFGKRAIGGKNGKYYVVTDPSDKDVVNPKPGTLRHAVIQKEPLWIIFKRDMVIKLKAELLMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNTYVRDSPEHYGWRTVSDGDGVSIFGGSHIWVDHCSLSNCRDGLIDAIHGSTAITLSNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPNNKDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSLVSSMTAGAGVLRCRKGSRC 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14312324 14314592 + XM_039029729.1 Bhi04g00601 32210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00601 408 SUPERFAMILY Pectin lyase-like 40 402 IPR011050 -
Bhi04g00601 408 PRINTS Pollen allergen Amb family signature 82 99 IPR018082 -
Bhi04g00601 408 PRINTS Pollen allergen Amb family signature 106 131 IPR018082 -
Bhi04g00601 408 PRINTS Pollen allergen Amb family signature 142 158 IPR018082 -
Bhi04g00601 408 PRINTS Pollen allergen Amb family signature 206 227 IPR018082 -
Bhi04g00601 408 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Bhi04g00601 408 PRINTS Pollen allergen Amb family signature 308 327 IPR018082 -
Bhi04g00601 408 PRINTS Pollen allergen Amb family signature 350 374 IPR018082 -
Bhi04g00601 408 PRINTS Pollen allergen Amb family signature 379 402 IPR018082 -
Bhi04g00601 408 Gene3D - 59 401 IPR012334 -
Bhi04g00601 408 SMART amb_all 134 331 IPR002022 -
Bhi04g00601 408 PANTHER PECTATE LYASE 6 405 - -
Bhi04g00601 408 PANTHER PECTATE LYASE 18-RELATED 6 405 IPR045032 GO:0030570
Bhi04g00601 408 Pfam Pectate lyase 145 323 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00601 Bhi-Chr4:14312324 Bhi08g01685 Bhi-Chr8:47635954 0 dispersed
Bhi04g00601 Bhi-Chr4:14312324 Bhi05g00119 Bhi-Chr5:2138790 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00601 K01728 - csv:101208076 732.635