Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00662 ATGGCCATGCATTCCCATCACAAGTTTTCTTGCGTTCATGCCAAGTATAACATGAACGCAGGTTTCTCGGTTGATCCGAGAATTTTGTCCTCGAAATTCCTATNCCTTCCCCTCGATTACCAGACCTTGCTTTCATCCTCCAACTTCCGCGATCGGATTCCTATGTTCGGATCCGATGAACTGGTTTCCTCTACTTCCGCCATATCCGAAGCCGAAGCACCTTCCACTACTCCAGATTTTCCGCTCCCAGAAGATGTTCATGTTCTCAGCCTCACCAAGGCCAAAATTCTCTCTCATCCTGCCTATCCTCGTTTGCTTCATGCTTATATTGACTGCCAGAAGGTTGGAGCTCCTCCGGAGATAGCTTGCTTGTTGGAGGAAATCCGGCGAGAAAACGACAGTCATAAACAAAACGGCATCACCACGTGCTTTGGAGCCGATCCCGAGCTGGATGAGTTCATGGAAGCGTACTGTGACATGCTGGTCAAGTATAAATCAGATCTCTCAAGGCCCTTTCATGAAGCTTCCTCCTTCTTGAACAACATTCAACTGCAACTTTGCAACCTCTGTGCTGGTGCCTCCACCAGAAGCCCTTCCAATGAGGATGCCATGTCATCAGACGATGAGCTTAACTGGGGAGAGAGGGAATTGCAAGATGGTCAAATGAGGTTAGAAGACAAAGGTCTTAAAGATATGCTCTTAAGTAGATTTGGTAGCCACATTGGTACCTTGAAGCTGGAATTTTCAAAGAAGAAGAAGAAAGGAAAACTGCCTAAAGAAGGAAGGAAAGTACTGCTCGATTGGTGGAATGTTCACTATAAATGGCCATATCCAACGGAAGCTGATAAGGTTGCGCTGGCAGAGACAACAGGACTAGATCCGAAGCAAATTAACAATTGGTTTATTAATCAACGAAAGCGGCACTGGAAACCATCTGAAAGTATGCAATTTGGAAATATGGATAATGTGGCTGAACAATTTTACGCTAGGCTTGACTCTTGAGAATGAGGTGTACATCGTCCAAATGGGTATATATTACATGCTTTAAAATCACTCACCATGCTAAGCCAATAGTTTAGCATATATCTCCAAGAGCAAGCAATTGTATTCATTACATGGGTGGGAAAAGATCAAAATGGCTTCCATACTTTTGTCTTGTAAATTTCTGAAATAATTAACATTAATTATGGAAATGTTAATCAAAGTTTGGATGATTTCTTTC 1222 42.96 MAMHSHHKFSCVHAKYNMNAGFSVDPRILSSKFLXLPLDYQTLLSSSNFRDRIPMFGSDELVSSTSAISEAEAPSTTPDFPLPEDVHVLSLTKAKILSHPAYPRLLHAYIDCQKVGAPPEIACLLEEIRRENDSHKQNGITTCFGADPELDEFMEAYCDMLVKYKSDLSRPFHEASSFLNNIQLQLCNLCAGASTRSPSNEDAMSSDDELNWGERELQDGQMRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLDWWNVHYKWPYPTEADKVALAETTGLDPKQINNWFINQRKRHWKPSESMQFGNMDNVAEQFYARLDS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15681009 15742890 + XM_039029884.1 Bhi04g00662 32271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00662 333 Pfam KNOX2 domain 144 190 IPR005541 GO:0003677|GO:0005634
Bhi04g00662 333 SMART ELK_2 228 249 IPR005539 GO:0003677
Bhi04g00662 333 SMART KNOX2_2 140 191 IPR005541 GO:0003677|GO:0005634
Bhi04g00662 333 SUPERFAMILY Homeodomain-like 249 320 IPR009057 -
Bhi04g00662 333 Pfam Homeobox KN domain 268 307 IPR008422 GO:0003677|GO:0006355
Bhi04g00662 333 Pfam KNOX1 domain 93 133 IPR005540 GO:0003677|GO:0005634
Bhi04g00662 333 ProSiteProfiles 'Homeobox' domain profile. 248 311 IPR001356 GO:0003677
Bhi04g00662 333 Pfam ELK domain 229 249 IPR005539 GO:0003677
Bhi04g00662 333 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 28 321 - -
Bhi04g00662 333 ProSitePatterns 'Homeobox' domain signature. 286 309 IPR017970 GO:0000981|GO:0006355
Bhi04g00662 333 CDD homeodomain 262 312 IPR001356 GO:0003677
Bhi04g00662 333 SMART HOX_1 250 315 IPR001356 GO:0003677
Bhi04g00662 333 Gene3D - 247 319 - -
Bhi04g00662 333 SMART KNOX1_2 90 134 IPR005540 GO:0003677|GO:0005634
Bhi04g00662 333 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 28 321 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00452 Bhi-Chr2:8715029 Bhi04g00662 Bhi-Chr4:15681009 6.24E-77 dispersed
Bhi04g00662 Bhi-Chr4:15681009 Bhi09g03182 Bhi-Chr9:81520335 8.07E-75 dispersed
Bhi04g00662 Bhi-Chr4:15681009 Bhi07g01752 Bhi-Chr7:48154438 1.25E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
902 PF03791 KNOX2 7.80E-23 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00662 - - csv:101210523 519.62