Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00710 TTGCCGATTCCTGTTTCTCCGACCCAATACGCCATTTTCTCTTTCACTCTCTCTCTCTCTTCAAAATGTCTATGATATTTGAGAGAGAGAGAAGGTGAAGATGAAGATGAAGACATAGTCACAGTTCTTCCCAAATATCTCTCTCACCATCCCCAAAATCTCTCCATAACAACACTCAACAAACCCTAACAGACAAATTTCATCTCACTTTCTTTCTTTTTCTTGCCCTAACTATTACAATTTTCCATTGTTCTTTTTTGCTGTTCGATCACCGCCGGTTCTTTTTCCGGCATGATAATGGACCCGAATCTTTGGCGTGCTTTTGCCGGCTATTCTGCCCATATCCACACTGTCGGTTCTGAAGTTTACTATTTCGTTCAAGGACATGTCGAACAAGCTACTTATGTTCCCACACTTTCTCGGTCTGTTCTTTCTAACCCTATTACTAAATGTATCGTTTCTGCTGCCGATTATAATGCCGATTCACTGTCTGACGAAGTCTGTCTTAAGTTGAATCTTAATCCAATTCGTCCTGGTGAGAGTGGGTCTGAAGTGGTTTCTGGATTTAATTGTTCTGATGATGGTAGTGGGAACAGGAATACAATTGAGAAGTTTGCTAAGATTCTTACATCTTCTGATGCTAATAATGGCGGTGGATTTTCTGTACCGCGGTATTGTGCCGATTCTATTTTTCCTCCCTTGAATTATAAGGTTGAACCGCCGGTGCAGACTTTATCGATTACTGATGTTCATGGAGTTGTTTGGAATTTTCGTCATATTTATCGTGGGACGCCGAGGCGGCATTTGCTCACTACTGGGTGGAGTAAGTTTGTGAATCATAAGAAGCTGGTTGCGGGTGATGCCGTCATTTTCGCAAAGAATTCCAGTGGGGATATGTTCGTGGGCATTCGTCGTGCCACACCCTCAAGGGCTATTGTAGGCGGTGATTGTAGCAGATGGAATAGCCAGATTGGTGGAGGAAGGTACAATGTGGAGGAGAAACGTTCTGGAGATGGAGGAAGTGAAGTTTTCTCCCGAAGTAATATTGGGAAGGTGCCGGCTGAGGCGGTCGCTAACGCTGCGGAATTGGCCACGCAATTTAAGCCATTCGAGGTGGTTTATTATCCTAGGGCTGGCTTGTCCGAATTTGTTGTTCCAGCTGAGAAAGTGAACAATTCGATGAATTATCAGTGGTATTCTGGGTTAAGAGTGAAAATGCCTTTGGAGACGGAGGATTCTTTGAAGATGCAATGGTATCAAGGGACTGTAACCTCAGCATCTATTCCTGCCCATGGGCCTTGGATGGGTTCTCCATGGCGTATGCTTGAGGTTACATGGGAAGAAACTGATGCTCTGCAGAGTGCTAAGTATGTGAGCCCTTGGGAGGTTGAACTTGCTACACCCACTCCTCCAATCCCTCCTCTTCACCCAGCAAAGAAATTTAGAGGTCCCCAGAAATCTGCGGTGGTGAATGGTGAAGCAGATCTGTTTTCACCTCTGATGACATTCGGTGATTCAACAATGGGGCAATTCAACCAATCATTGTTGAGTTTTAACTCATTTCCTGCTGGCATGCAGGGAGCCAGGCAAAATTTTTTCTGTGAATCTGGGTTATTCAATCCATATAATGAAATTACTCCACCAACATGTGATGAAATTTCCACGTGCAAGCTGAATGCAGCGCCAAAGACACAAACGGTGTCTACTGACCTCCAAATTGGTAGTGTGCAATCGGATACCTTATCGCCTGATAGTCAGGCTAGTGTTCTTTCCTTTGCCACAGGAACGGCTGAGAACCAGACCTGCAACTCAACTAAAGCTGGAGTATATTCAATTCAATTGTTTGGTCAAATCATATATACGAATCCGCCTGTTCAAAATGGACATCACGGTGCTAACAATGACGATGGCGACAAGAAGCGTAAACAGTCCAGCTGATCTTCTTTGATCAGTACAAACTTTCTTGTAGTGTACTAGACTGGGAGCCTTGGGATCCAAAGTTCTTCCTTAGTAAATAGTAGTAACATCTTTGTTTTGAGTAGAAGCAGCTGTACAGTACAGGTACTTGAGCTAGGCAGGAAGCTGACTACAGTATGAACATCCGTAGCTGATTGTGTTTTTTCCATGGTAGTTTGTTTTGTCTGACCTCAAAAAGTCTAAGACTCTTTGATTTGAATATTTGTTGACGTTTGAATATTTTGTTGCTGAGTTTGCTTTAGATGTTGACAATGCTTTGGATATTGTTGAACTATTTTAATGCTTTTTCTAGTGTATGGTTTGAGACATGATTTGTTATGCTCTTGATTGTTTTATTCTTTTTTATTATTATTATTATTATTATTATTGTA 2348 42.29 MIMDPNLWRAFAGYSAHIHTVGSEVYYFVQGHVEQATYVPTLSRSVLSNPITKCIVSAADYNADSLSDEVCLKLNLNPIRPGESGSEVVSGFNCSDDGSGNRNTIEKFAKILTSSDANNGGGFSVPRYCADSIFPPLNYKVEPPVQTLSITDVHGVVWNFRHIYRGTPRRHLLTTGWSKFVNHKKLVAGDAVIFAKNSSGDMFVGIRRATPSRAIVGGDCSRWNSQIGGGRYNVEEKRSGDGGSEVFSRSNIGKVPAEAVANAAELATQFKPFEVVYYPRAGLSEFVVPAEKVNNSMNYQWYSGLRVKMPLETEDSLKMQWYQGTVTSASIPAHGPWMGSPWRMLEVTWEETDALQSAKYVSPWEVELATPTPPIPPLHPAKKFRGPQKSAVVNGEADLFSPLMTFGDSTMGQFNQSLLSFNSFPAGMQGARQNFFCESGLFNPYNEITPPTCDEISTCKLNAAPKTQTVSTDLQIGSVQSDTLSPDSQASVLSFATGTAENQTCNSTKAGVYSIQLFGQIIYTNPPVQNGHHGANNDDGDKKRKQSS 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17101903 17106276 + XM_039030663.1 Bhi04g00710 32319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00710 548 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 545 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bhi04g00710 548 MobiDBLite consensus disorder prediction 526 548 - -
Bhi04g00710 548 Pfam Auxin response factor 263 345 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bhi04g00710 548 Pfam B3 DNA binding domain 108 209 IPR003340 GO:0003677
Bhi04g00710 548 Gene3D - 301 372 - -
Bhi04g00710 548 SUPERFAMILY DNA-binding pseudobarrel domain 102 210 IPR015300 -
Bhi04g00710 548 ProSiteProfiles B3 DNA-binding domain profile. 108 210 IPR003340 GO:0003677
Bhi04g00710 548 Gene3D - 105 210 IPR015300 -
Bhi04g00710 548 CDD B3_DNA 108 208 IPR003340 GO:0003677
Bhi04g00710 548 PANTHER AUXIN RESPONSE FACTOR 2 545 - -
Bhi04g00710 548 SMART B3_2 108 210 IPR003340 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00710 - - - csv:101216118 890.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00710 Bhi-Chr4:17101903 Bhi10g00537 Bhi-Chr10:11941988 2.95E-111 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g337 . . . . . . . . . . . . . . Sed04g0120 . . Bhi04g00710 Tan02g2359 Cmetu03g1655 . . . . Cla08g01088 Cam08g1540 Cec08g1114 Cco08g1241 Clacu08g1243 . Cre08g1024 . . . . . . . Cme03g01500 Blo17g00126 Blo18g00139 . . . . Bma01g01425 . . . . Cma12g00140 . . . . . . . . . . . . . . . . . . . Lsi08g00944 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006011 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
904 PF02362 B3 2.70E-20 CL0405 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00710 Bhi_Chr04 FPKM 10.16358 11.310304 14.495985 14.968977 11.378228 13.401944 15.222516 19.094984 16.343184 14.646894