Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00711 CAAGAACTCGGGTCGAGTCGGATCTCGGAGACGATTTAGGGCTCCACTAAAACGAAATTACCAGAAACTCAGACAGAGAAGGTAGAAGAAGAAGAAGAAGAAGAAGAGGAGTACCAAATCCCTGCTCAATTCCAATTCGTAATCGTTGTCAATGGCAGCTTTTGCTCTCTCTAATTACACTCTCATTTCTCCTCGCCCTTCTACTCCACTCGTTTCTTCTTCCTCTAAAACCCTAGAATCCACATCCCTTATTCACCAACCTCTTTGTCTTCGTCATAATCCTCCCCATCGCTCTCGTCTTTGTAACTCATTATTAAGTTTCTCTCCCACCACCCCTTCTTCTCCAGTTACTCGTTCTTTCGTATCCTGTCTTTCTGCTCATGATTCTGTTGCCAATGTAAATAATGAAGAAGATGATGGAAAAGCTATGGAAAAAGATGGATATCAGTTTGATAGATATAGCTTGCAGACCCTCATAGATGTATACCGAGAAGCTTTTCTTGACGGAGATCAGAAGACTGTTTCTGAAGTCGAGGCGAAAATAAAAATAATTGGGAGGGAGAAAGATGGGCTGTTCCAGAAAGTGTCCAATGTATCGGCGGAGATAACATCTGGAAAAGAGAAATATATACGCCTACAAGCTGATTTTGATAATTTTAGGAAAAGATCAGAAAAAGAACAACATACCGTGAAGAACAATGCTCAAAAGGAGGTTATCGAGAGCCTATTACCAATCATTGACAATTTTGAGAAAGCCAGACAACAAATTGTTCCTCAAACTGACAAGGAGAAAAAGATTGACATAAGCTACCAGGGTATATACAAGCAATTTGTGGAGACGTTGAGGAGCTGGCGTGTCTCAGCTGTTGCCACCGTAGGAAGACCATTCGATCCTTCATTACATGAAGCTGTCGCTCGAGAGGAGTCACAGGAGATCAAGGAAGGGATCATTATTCAAGAATTACGACGTGGGTTTCTGCTCGGTGAACGACTTCTTAGACCAGCAAGAGTAAAAGTTTCAAAAGGTCCAGGTAGGAGGAATTCCCCGACAATCAACGCCGGGCAAAAACCTGCAGCTGCTGCTGGAGTAGATGAACATTGATCAATTCAACACCATTTTTTGGTTCATCTCAAAGAATTGGATTTATTGGCTTATTGTAGCACCATAGTGTAAATGTATCTCTTAGACTTTCTTTTTCAACTAGTTTTTTGATCCTTACCATCTTAAGAGTTGATATATAGGACATTTTTTTCTTTACCAGCAGTCACTGGCTATCTATTTTCTTCTCTTTCCCCTTAAAAAATAATCTTATTGAGGATATAATATCAAAGATAACCTTTATGAAAGCCTGGTTGGCAATCCATGATACCTGTTCTGTTTT 1382 40.38 MAAFALSNYTLISPRPSTPLVSSSSKTLESTSLIHQPLCLRHNPPHRSRLCNSLLSFSPTTPSSPVTRSFVSCLSAHDSVANVNNEEDDGKAMEKDGYQFDRYSLQTLIDVYREAFLDGDQKTVSEVEAKIKIIGREKDGLFQKVSNVSAEITSGKEKYIRLQADFDNFRKRSEKEQHTVKNNAQKEVIESLLPIIDNFEKARQQIVPQTDKEKKIDISYQGIYKQFVETLRSWRVSAVATVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGRRNSPTINAGQKPAAAAGVDEH 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17134623 17136910 + XM_039028202.1 Bhi04g00711 32320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00711 316 Gene3D - 119 232 IPR013805 -
Bhi04g00711 316 Pfam GrpE 141 291 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Bhi04g00711 316 PANTHER GRPE PROTEIN HOMOLOG 1 301 - -
Bhi04g00711 316 Gene3D Head domain of nucleotide exchange factor GrpE 236 291 IPR009012 GO:0006457
Bhi04g00711 316 PANTHER GRPE PROTEIN 1 301 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Bhi04g00711 316 ProSitePatterns grpE protein signature. 246 289 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Bhi04g00711 316 PRINTS GrpE protein signature 160 176 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Bhi04g00711 316 PRINTS GrpE protein signature 188 203 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Bhi04g00711 316 PRINTS GrpE protein signature 243 258 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Bhi04g00711 316 PRINTS GrpE protein signature 270 289 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Bhi04g00711 316 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 141 233 IPR013805 -
Bhi04g00711 316 MobiDBLite consensus disorder prediction 288 316 - -
Bhi04g00711 316 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 238 293 IPR009012 GO:0006457
Bhi04g00711 316 CDD GrpE 156 289 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Bhi04g00711 316 Hamap Protein GrpE [grpE]. 84 291 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00711 K03687 GRPE; molecular chaperone GrpE - csv:101215875 512.301
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g02547 Bhi-Chr3:61573812 Bhi04g00711 Bhi-Chr4:17134623 3.09E-64 dispersed
Bhi03g02548 Bhi-Chr3:61574520 Bhi04g00711 Bhi-Chr4:17134623 1.96E-38 dispersed
Bhi04g00711 Bhi-Chr4:17134623 Bhi11g00582 Bhi-Chr11:13198602 4.53E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g338 . . . . . . . . . . . . . Car12g00130 Sed04g0119 . Cpe07g00118 Bhi04g00711 Tan02g2357 Cmetu03g1212 . Hepe10g0529 . . Cla08g01087 Cam08g1539 Cec08g1113 Cco08g1240 Clacu08g1242 . Cre08g1023 . . . . . Csa04g01882 . Cme03g01499 . . . . . . . Bma02g00258 . . . Cma12g00139 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012843 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 0 1 2 0 1 1 1 1 1 1 0 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00711 Bhi_Chr04 FPKM 15.031286 17.806059 18.643055 18.788149 16.009186 16.773363 16.247334 29.404968 28.176008 27.418865