Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00799 ATTAGCATCTAATTATTTATACGGTGATGCAGTTCTGATTGCTCAATACATTGAAGTTTTGGTGATTAGTTATTGCATTTCTGCGCGTTTCCTGCGATTTTGCTTCGTTATGAAACGCCTCGGCTGGCTAGGGCTGTGCCGGCGGCAATTACTTTCATCTGTAGGCGTAGAGTCGTCCATTGATCCACGACTCCCGCTCGGAAAAGTTTCATCGTTACGTCAGCTTTTTTCATGTACCCGAGCGTTGCAAGCATTTCCTTCTGCCGTCGGGAAATCTACTGATTTTGCCACAGCATTACCAGCGAGTAGATGTTTCATACACGCCACAGGCTCATGTCACTCTATCGAACGAGATTACTATGAAATTCTGGGGGTTCAACACAATGCCAGTCGAGAAGAGATTAAAAAGGCATACCATGCGTTGGCGAAAAAGTATCATCCGGATGCAAATAAGAACAATCCTTCTGCCAAGAGGAAATTTCAGGAGATAAGAGAAGCCTATGAGACTCTGCAGGATTCTGAGAAGAGATCCCAATATGACCAGAGACGTGGTGGAGAATTTGAAAATGTAGGGTTTGGTGCTGGTGGCACAGAGGGGTTTAGCTATACTTATCGAACCCATTTTTCTGACTCATTTCAAAAGATTTTCTCTGAGATCTTTGAACATGAGACCAGCCGTTTTGCCTCAGATATTCAGGTTGACCTGTCATTATCTTTTACGGAAGCTGCAAAAGGATGCACAAAGCATTTGTCCTTTGATGCTTTTGTTCCCTGTGATTCTTGCTATGGGCGTGGCTATCCAGTAAATGCAACAAAAAGAAGTTGCCCCACTTGCAGAGGTTTAGGTAGAGTTACTATACCTCCGTTTACATCAACGTGCACCACTTGCAAAGGATCGGGTCAAATCATTAAGGAATTGTGTGTGCAATGCAGGGGAATGGGGGTTGTAGAGGGTGTCAAGGAGGTTACAGTTACTATACCTGCTGGGGTTGATTCTGGAGATACCATTCGTGTGCCCGAAGCTGGTAATAGTGGTGGACGAGAAAGTCATCCTGGCAACTTGATCATTAAATTGAAGGTTGCTGAAGATCGTATCTTTAAGAGGGATGGTGTGGATATTTATGTGGATTCTAATATCTGCTTCACTCAAGCTATTCTTGGGGGCAAGGTTGAGGTTCCAACATTGTCAGGCAGGATACAAATAAATATACCAAAAGGCGTTCAGCCAGGACATCTCCTAATACTGAGAGGGAAAGGATTGCCAAAACATGGACTTTTTGTTGATCGTGGAGATCAATATGTGCGATTCCGTATTAAATTTCCCACTGAAATAAGTGAACGCCAACGTGCCATTTTAGAAGAATTTGCTGAAGAAGAAATAAAGAATGGGATTGACGACTCAAATAAAGCAAGTTGGTCAGTTTTCTCCTTATGTACCCTGCATGGCCGATGTTTTCTTTTTTTGAATTTCCCCCTCCAGCTGTTAAGCTAGATTTATTAATCATTTGATGAAAGGTGGCAACGAATTCTTAACCGTGTCGGGGAACCTATGTTTGTTCTTGAATTGTCCCTATTAATCTTGTTCATTGTGCTCCTTACGTCAAGGGGCTGAACGAGGTCCAGAGGTTTCAGTGGGAGATATTTT 1645 42.98 MKRLGWLGLCRRQLLSSVGVESSIDPRLPLGKVSSLRQLFSCTRALQAFPSAVGKSTDFATALPASRCFIHATGSCHSIERDYYEILGVQHNASREEIKKAYHALAKKYHPDANKNNPSAKRKFQEIREAYETLQDSEKRSQYDQRRGGEFENVGFGAGGTEGFSYTYRTHFSDSFQKIFSEIFEHETSRFASDIQVDLSLSFTEAAKGCTKHLSFDAFVPCDSCYGRGYPVNATKRSCPTCRGLGRVTIPPFTSTCTTCKGSGQIIKELCVQCRGMGVVEGVKEVTVTIPAGVDSGDTIRVPEAGNSGGRESHPGNLIIKLKVAEDRIFKRDGVDIYVDSNICFTQAILGGKVEVPTLSGRIQINIPKGVQPGHLLILRGKGLPKHGLFVDRGDQYVRFRIKFPTEISERQRAILEEFAEEEIKNGIDDSNKASWSVFSLCTLHGRCFLFLNFPLQLLS 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20089613 20104206 - XM_039029151.1 Bhi04g00799 32408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00799 460 CDD DnaJ 82 136 IPR001623 -
Bhi04g00799 460 SUPERFAMILY HSP40/DnaJ peptide-binding domain 193 338 IPR008971 GO:0006457|GO:0051082
Bhi04g00799 460 ProSiteProfiles Zinc finger CR-type profile. 209 283 IPR001305 GO:0031072|GO:0051082
Bhi04g00799 460 Pfam DnaJ domain 82 144 IPR001623 -
Bhi04g00799 460 PRINTS DnaJ domain signature 84 102 IPR001623 -
Bhi04g00799 460 PRINTS DnaJ domain signature 102 117 IPR001623 -
Bhi04g00799 460 PRINTS DnaJ domain signature 119 139 IPR001623 -
Bhi04g00799 460 PRINTS DnaJ domain signature 139 158 IPR001623 -
Bhi04g00799 460 ProSitePatterns Nt-dnaJ domain signature. 124 143 IPR018253 -
Bhi04g00799 460 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 209 280 IPR036410 -
Bhi04g00799 460 CDD DnaJ_C 193 408 - -
Bhi04g00799 460 Gene3D - 218 251 - -
Bhi04g00799 460 Gene3D - 252 286 - -
Bhi04g00799 460 SUPERFAMILY HSP40/DnaJ peptide-binding domain 330 416 IPR008971 GO:0006457|GO:0051082
Bhi04g00799 460 Gene3D - 193 322 - -
Bhi04g00799 460 Gene3D DnaJ domain 79 192 IPR036869 -
Bhi04g00799 460 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 44 442 - -
Bhi04g00799 460 SMART dnaj_3 81 139 IPR001623 -
Bhi04g00799 460 CDD DnaJ_zf 222 278 IPR001305 GO:0031072|GO:0051082
Bhi04g00799 460 Pfam DnaJ C terminal domain 195 405 IPR002939 -
Bhi04g00799 460 Pfam DnaJ central domain 222 278 IPR001305 GO:0031072|GO:0051082
Bhi04g00799 460 Gene3D - 325 435 - -
Bhi04g00799 460 SUPERFAMILY Chaperone J-domain 81 172 IPR036869 -
Bhi04g00799 460 Hamap Chaperone protein DnaJ [dnaJ]. 79 427 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Bhi04g00799 460 ProSiteProfiles dnaJ domain profile. 82 147 IPR001623 -
Bhi04g00799 460 PANTHER CHAPERONE PROTEIN DNAJ 1, MITOCHONDRIAL 44 442 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00799 - - - csv:101208756 759.214
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00797 Bhi-Chr4:20089601 Bhi04g00799 Bhi-Chr4:20089613 0 dispersed
Bhi04g00799 Bhi-Chr4:20089613 Bhi09g00611 Bhi-Chr9:13053317 3.35E-93 dispersed
Bhi04g00798 Bhi-Chr4:20089601 Bhi04g00799 Bhi-Chr4:20089613 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g470 . . Bda01g00899 . . . . . Cmo05g00549 . . . . . . . . Bhi04g00799 . . . . . Lcy13g1511 Cla08g01139 Cam08g1598 Cec08g1169 Cco08g1296 Clacu08g1298 . Cre08g1081 . Cone7ag1258 . . . . . Cme03g01833 . Blo18g00120 . . . . Bma01g01394 . . . . . Cma05g00520 Car05g00471 . . . . . . . . . . . . . . . . . Lsi08g00997 Csa02g02181 Chy03g01336 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011221 1 3 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00799 Bhi_Chr04 FPKM 10.323421 10.210627 10.563188 10.698564 11.225715 6.635824 9.689864 1.095787 1.969781 1.158928