Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00810 AAAAATTGATGGCCACTCTCTCATCCCCTCTCTTATCCTTTCTTTTCTCCCCTCTTTAAATTATATATTTTTTATTATTCTCCAAAAGGGTTAACTTGAAAACCCCCCCAAAAAATTACTTTTTTAATTTTTTAAAAAATATTTTGTTGTTTTGTTTTATTTATAAACACATCTGAAGAAGATATACAGAACCCATATTTTGTTTTGTTTTAATCTAATCTCCGGCAAAAGAAAGTTTTCATTTTTAATTTTTTTTTTCAAAAAAAAATCGATTTTTTTTGGGGATTCTTCAAAAATGGAATTTGACGAGGAGAACGACGATGAAATAATGGAAGAGATGCCAATCGCCACTCACCACTACGACTCGCTCAGTAACTCAGCTTCAACTCGGCCCAAACACGGAGAAGGTTCATCGGCGGTGAGAAAAAGCAGCAGCAGCAGCAGCGGAGGGAGTAATATTAGATATAGAGAGTGTTTGAAGAATCACGCCATCGGAATCGGCGGACACGCGGTGGACGGTTGCGGCGAATTTATGCCGGCGGGAGAAGAAGGGAGTATAGATGCACTAAAATGCGCCGCCTGTAACTGTCACCGGAATTTTCACCGGAAAGAAACGGATTCAGATCAAGGACATTACTATTACCAACAACAGCAGCTACAAATTTGTTCATATCGTGGGCCCACCCCGCACCCATCTGCTTACGTGTACTTAAGAGGAGCCCCAGTTCAACCAAGGGCGTTGGCGTTGCTGGCGGCGGGGAGGGAGGAGGATGATACGTCAAATCCGAGTAGTAGTGGCGGAGGAGGCGGCGGCGGCGGAGGAAGTGGAAGTGGGTTGTTGAAGAAGAGATTTAGGACAAAGTTTAGTACAGAGCAAAAGGAGAAAATGTTAGGGTTTGCGGAGAAAGTTGGATGGACAATTCAGAAACACGACGAGGCTGACGTGGAACGATTCTGTACGGAAACCGGAGTCCGTCGGCAAGTACTTAAGGTGTGGATGCATAACAATAAGCATACTTTGGGGAAGAAACCCTAAATTTAATTAGGGTTTTGTTTCATTTTAATTTGGTGAGTTTAATTAGCAATGGATTATTATTATTGATCTTCTTCTTTCTTCTTCATGATGATTATGATCATGTTCTTTAGTGCATTGTTGAAGAAAAATTCCCAATTTAGGGGTTGAAAACTAGGGTAGATTAACTAGGGGCTTTTTTTGGGATGAGTTTGAGTAGTTTTGAAGTTTTTTGGGGGGAAGGTATGAATTTGATGAGGATGATGATGTTAAGAATTAAAAAATGAATTGCACACACCATTTATTAATGGGGTTGTGTTGAAAATTTGAAA 1344 40.33 MEFDEENDDEIMEEMPIATHHYDSLSNSASTRPKHGEGSSAVRKSSSSSSGGSNIRYRECLKNHAIGIGGHAVDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYYQQQQLQICSYRGPTPHPSAYVYLRGAPVQPRALALLAAGREEDDTSNPSSSGGGGGGGGGSGSGLLKKRFRTKFSTEQKEKMLGFAEKVGWTIQKHDEADVERFCTETGVRRQVLKVWMHNNKHTLGKKP 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20322896 20324239 - XM_039029631.1 Bhi04g00810 32419

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00810 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 37 245 - -
Bhi04g00810 246 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 183 239 IPR006455 -
Bhi04g00810 246 Gene3D - 169 244 - -
Bhi04g00810 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 37 245 - -
Bhi04g00810 246 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 56 106 IPR006456 -
Bhi04g00810 246 SUPERFAMILY Homeodomain-like 170 244 IPR009057 -
Bhi04g00810 246 MobiDBLite consensus disorder prediction 1 53 - -
Bhi04g00810 246 MobiDBLite consensus disorder prediction 21 53 - -
Bhi04g00810 246 MobiDBLite consensus disorder prediction 155 182 - -
Bhi04g00810 246 Pfam ZF-HD protein dimerisation region 55 107 IPR006456 -
Bhi04g00810 246 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 57 106 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00810 - - - csv:101216697 388.267
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00810 Bhi-Chr4:20322896 Bhi06g00400 Bhi-Chr6:8781289 1.64E-50 dispersed
Bhi08g01167 Bhi-Chr8:36727427 Bhi04g00810 Bhi-Chr4:20322896 2.93E-22 dispersed
Bhi08g01168 Bhi-Chr8:36727427 Bhi04g00810 Bhi-Chr4:20322896 9.09E-23 dispersed
Bhi01g02358 Bhi-Chr1:57657076 Bhi04g00810 Bhi-Chr4:20322896 4.57E-45 transposed
Bhi04g00174 Bhi-Chr4:4152079 Bhi04g00810 Bhi-Chr4:20322896 2.31E-53 transposed
Bhi11g00836 Bhi-Chr11:23129785 Bhi04g00810 Bhi-Chr4:20322896 1.92E-52 transposed
Bhi03g01151 Bhi-Chr3:23235117 Bhi04g00810 Bhi-Chr4:20322896 6.65E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g479 . Blo12g00721 . . Bpe02g00132 . . Bma01g02594 Cmo05g00555 . . . . . Sed04g0182 . . Bhi04g00810 Tan02g2444 Cmetu03g1591 . Hepe10g0451 . Lcy13g1504 . . . . . . . . . Cone17ag1192 . . . . Cme03g01827 . . Bda11g00787 . . . . . . . . . Cma05g00527 Car05g00476 . Cpe11g00465 . . . . . . . . . . . . . . . Lsi08g01003 Csa02g02187 Chy03g01330 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00810 . 53 246 ZF-HD Transcription Factor Family AT5G65410 51.5 2.3e-45 180.3
Bhi04g00810 . 22 242 ZF-HD Transcription Factor Family AT4G24660 52.7 2.7e-52 203.0
Bhi11g00836 . 57 194 ZF-HD Transcription Factor Family AT4G24660 52.7 1.1e-42 171.0
Bhi03g01303 . 128 334 ZF-HD Transcription Factor Family AT2G18350 53.8 6.4e-50 195.3
Bhi03g01302 . 128 334 ZF-HD Transcription Factor Family AT2G18350 53.8 6.4e-50 195.3
Bhi11g03003 . 12 298 ZF-HD Transcription Factor Family AT5G15210 50.5 2.5e-49 193.4
Bhi06g00400 . 1 252 ZF-HD Transcription Factor Family AT5G15210 51.2 3.3e-49 193.0
Bhi06g00400 . 17 254 ZF-HD Transcription Factor Family AT3G28920 59.3 3.4e-58 223.0
Bhi11g03003 . 22 283 ZF-HD Transcription Factor Family AT3G28920 60.7 9.9e-58 221.5
Bhi06g00400 . 25 258 ZF-HD Transcription Factor Family AT5G39760 55.4 7.4e-51 198.7
Bhi11g03003 . 30 273 ZF-HD Transcription Factor Family AT5G39760 55.7 2.9e-47 186.8
Bhi04g00810 . 22 242 ZF-HD Transcription Factor Family AT4G24660 52.7 2.7e-52 203.0
Bhi11g00836 . 57 194 ZF-HD Transcription Factor Family AT4G24660 52.7 1.1e-42 171.0
Bhi06g00400 . 25 258 ZF-HD Transcription Factor Family AT5G39760 55.4 7.4e-51 198.7
Bhi11g03003 . 30 273 ZF-HD Transcription Factor Family AT5G39760 55.7 2.9e-47 186.8
Bhi03g01303 . 128 334 ZF-HD Transcription Factor Family AT2G18350 53.8 6.4e-50 195.3
Bhi03g01302 . 128 334 ZF-HD Transcription Factor Family AT2G18350 53.8 6.4e-50 195.3
Bhi04g00810 . 53 246 ZF-HD Transcription Factor Family AT5G65410 51.5 2.3e-45 180.3
Bhi11g03003 . 12 298 ZF-HD Transcription Factor Family AT5G15210 50.5 2.5e-49 193.4
Bhi06g00400 . 1 252 ZF-HD Transcription Factor Family AT5G15210 51.2 3.3e-49 193.0
Bhi06g00400 . 17 254 ZF-HD Transcription Factor Family AT3G28920 59.3 3.4e-58 223.0
Bhi11g03003 . 22 283 ZF-HD Transcription Factor Family AT3G28920 60.7 9.9e-58 221.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
908 PF04770 ZF-HD_dimer 2.60E-30 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00810 Bhi_Chr04 FPKM 12.565393 12.713314 9.785554 9.555368 8.801341 9.250069 9.067129 10.128448 9.348185 8.557136