Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00811 AAACTTGTACACTTTCAAAAAAACCAGCCTATTGAATTCATTTTCTTTGTGTCTCCTCTCCCAATTTCATCTTCATACTATGAGTTTGGCTTTGAAATTAATGGCTTTATTGTGCTCTGGTTTCTAATTACCCAAACTCCCACTCCCTTCCCTTTCAAATGGATTTCTTTTCAACCTGTACTTCTGACTCTGCCATTCCCATCTGCGGCTGCGATCTCAAAATCAAACCCAAAAACCCTTTTCAAATCAGGAACTTTTCTTATTCCGACCTTCTCTCTTCGACTCATTCCTTCTCTTCCGACTGTTTTTTAGGCAAAGGCAGCCACGGCACCGTTTACAAGGCCGTCCTCGACGGCGGCAAGCTCATCGTCGCCGTCAAACGAACCAAATTCACTAACCCATCTCCTAATTTTCACTACAATTCTTCTAATCCTGCCGAAAACGAAATCGAAATCCTTTCCCGGCTTCGAAACCCCAGAATCGTGAATCTCATTGGCTTTTGTGCCAATTCCAAGGACGAGAAATTGCTGGTTGTTGAGTTCATGCCCAATGGCTCCCTTTACGATCTTCTCCATTCCCAATCTAGACCGCCCGGTTGGACTCGCCGACTCCAGTTCGCTTTACAAGTGGCCAAAGCGGTTCGAGCTCTTCACACGTCGAACCCGCCGGTTATTCATAGAGATATTAAGTCGTCTAACGTTTTAATCGACGGTAACTTCAACGCGCGTCTTGGGGATTTTGGTTTAGCGTTGAGAGGACACGTGGAAGATGTGCGCGTGAGATGCACGCCCCCAGCTGGCACGTTGGGTTATCTTGACCCCGGCTATCTCGCACCTGCCGATTTGAGTGTGAAGAGCGACGTTTTCAGTTTTGGGATTTTGCTTTTGGAAATCCTTAGTGGTCGAAATGCTATCGACGTCCACCATAGCCCGCCGTCGGTCGTCGACTGGGCGTTGCCGATGATCAAACACGGCGATTTCGATGGGTTGTGCGACCCACGAATTGGATCTCCCACTAACTCGGCGGTGATCCGATGTATGGCGGTTCTGGCGGCGAAGTGTGTTCGGTCCACCGTGCAGAAGCGGCCGGATATGGTGGAGGTTGTGGAGTGTTTGAAGGCAGTCAAGAAGAAGCTGCACGTGCCACCGATATGGAACAATCTGAGGCGGCGGGAACGTCACGTGGAGAATCTCCAGCCGTTGATTTCGAACTTTGATGAACCGGACGGTAGTGATGAGCCGGTGAGGGTTTGTCGAATAGGAAGCCGGAGGAATCGGAAAGTATCCAGTGTTTCGAGTACAGAGTATGGAATTAAGACGATTGGGCGAGTGGTTAGATCGAGATCAATGGGTTCGGTGAACGATGTGAAATTGGGACAAATTAATTCCAATGTCGGCGGAAGTTATTACTCTTCGTTGGGTGGCCGGCGGAAGTACAGCGGCGTTGCAGTGAAAATTCCGACGATGACACTTAGTAAATCGAGGTCGGTGGGAGTGTCAGAGAATCCGAAATTTGTAGAATTTAATCGGAGGGCGGCGAGTTTTCTGCCGGAAATTGAAATGTCCAAATTGACGATTGGTTGTGATGGTAAATCCGAGAATCAGATGCTTGAGAAACCGTTGTTCCAAAAATAACAATCTAGATGAAAGTTAAAATTGTTTGTGATTGATTT 1672 47.73 MDFFSTCTSDSAIPICGCDLKIKPKNPFQIRNFSYSDLLSSTHSFSSDCFLGKGSHGTVYKAVLDGGKLIVAVKRTKFTNPSPNFHYNSSNPAENEIEILSRLRNPRIVNLIGFCANSKDEKLLVVEFMPNGSLYDLLHSQSRPPGWTRRLQFALQVAKAVRALHTSNPPVIHRDIKSSNVLIDGNFNARLGDFGLALRGHVEDVRVRCTPPAGTLGYLDPGYLAPADLSVKSDVFSFGILLLEILSGRNAIDVHHSPPSVVDWALPMIKHGDFDGLCDPRIGSPTNSAVIRCMAVLAAKCVRSTVQKRPDMVEVVECLKAVKKKLHVPPIWNNLRRRERHVENLQPLISNFDEPDGSDEPVRVCRIGSRRNRKVSSVSSTEYGIKTIGRVVRSRSMGSVNDVKLGQINSNVGGSYYSSLGGRRKYSGVAVKIPTMTLSKSRSVGVSENPKFVEFNRRAASFLPEIEMSKLTIGCDGKSENQMLEKPLFQK 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20443611 20445282 - XM_039028463.1 Bhi04g00811 32420

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00811 491 Pfam Protein kinase domain 50 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi04g00811 491 ProSitePatterns Protein kinases ATP-binding region signature. 51 74 IPR017441 GO:0005524
Bhi04g00811 491 Gene3D Phosphorylase Kinase; domain 1 20 128 - -
Bhi04g00811 491 PANTHER OS01G0750732 PROTEIN 1 465 - -
Bhi04g00811 491 PANTHER - 1 465 - -
Bhi04g00811 491 SMART serkin_6 45 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi04g00811 491 Gene3D Transferase(Phosphotransferase) domain 1 129 332 - -
Bhi04g00811 491 ProSiteProfiles Protein kinase domain profile. 45 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi04g00811 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Bhi04g00811 491 SUPERFAMILY Protein kinase-like (PK-like) 25 319 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00811 - - - csv:101208276 784.252
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00811 Bhi-Chr4:20443611 Bhi11g01352 Bhi-Chr11:39801698 2.04E-121 dispersed
Bhi04g00811 Bhi-Chr4:20443611 Bhi02g01134 Bhi-Chr2:26218661 2.40E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g480 . . Bda01g00901 . . . . . . . . . . . . . . Bhi04g00811 . . . . . Lcy13g1503 Cla08g01146 . . . . . . . . Cone17ag1191 . . . . Cme03g01826 . . Bda11g00788 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01004 Csa02g02188 Chy03g01329 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012718 2 1 0 0 0 0 1 0 0 1 1 0 1 1 0 1 0 1 1 0 1 0 0 0 0 1 1 1 0 1 16
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87668 PF00069 Pkinase 3.20E-39 CL0016 Bhi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00811 Bhi_Chr04 FPKM 15.277517 17.14843 7.89471 8.817763 13.225837 11.298213 10.919008 9.751096 9.654476 8.325136