Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00858 AAAAGTGATATTTTCCCAAATGATTGCATAGTATAATACGTATGGGATAGGCTTCTTCTTTGTAGATAGATATCCAGGCATTCTCGAGTTCATTGATGAACTGGATCAAGCAATTGTAGAAGTGAATTCATAGACAAATCAACCGATCCGATCTTCGTTTCTTTCGCGAGCTCAGCTTCTGATAGCAGCAAAGACGCCCCACCTCGGTGCCTTCCTTTGATCCGTTTCGCATTCTAAAGTCTGAATTCTCACCGTTACGCTGCTTTCGTTGCCAAGGCGATGGAGGAGTCCGGAACTCGACCTTCTGCCGCTAAGTTGTCTGGAAAAGTCGTTGCTATTGCGGCCGGTGAAGCTCACACTCTCGTTCTCACAGGAGATGGGAGTGTGTATTCATGGGGAAGAGGAATGTTTGGGCGGCTTGGGACTGGGGCGGAAGCGGACGAGCTTTTCCCTGTTCGACTTAAGCTTGGTTCGGAGGATAAGAATCTCAGAGCTGTGGCAATTGCTGCTGGTTCTTATCATAGCCTCGCTCTTGCTGATGATGGGTCAGTTTGGTGCTGGGGTTACAACATTTATGGCCAACTTGGATTTGATGGAGGGAATTCCGCCACCCCCTGCTTGCTGAAGCAGTTCCTTGAGTTGGAATCTCCTGAATCTTTGACAGAAGAGTCAGGCTCAAAGAGCAAGGAGTCACTAAAGATTTGTGACATCAAAGCCGGGGGGTTGATTTCTTTTGCAATTGACGATCTTGGAGCTTTATGGATGTGGGGTAATTGTCCAAAACCAGACAGTGAGGATGAAGTTGGCCTATCTTATGTTAGCAGCTTCACACCCTCTCCGGTGTGGGAGTTCCATGGCCATACTGTTGTTAAGGTTGCTTGTGGAAATGCGCATATTGTGGCCCTGGTTAGTGTTGGGGAAACCTACAATAAAGGTGGAGACTTAGTTTGCTACTCCTGGGGAGATAATTCTCATGGTCAATTAGGCCTGGGAGATGGAGATGGGAGGCCACGCCCCCAAATTATCGAGACGTTTAACGAGGCATCCCCTTGGGCAGTGTACGAAGTAGCGTGCGGGGCATTCCATACTGCTTTGCTTACCCGCAGAAAGAGATCATGTGATGACTTAGAAAGTGTGTGTTGGACATTTGGTCTTGGGGAAAATGGACAGCTTGGGCATGGAACCACCCAAAATGAATTGCTTCCTAAGCCTGTAAAAGAATTGCCACAATCTGTATCTCTGATCTCAGTTGATTGTGGCCTATTTCATACGAGTGTTGTTTCATCAGATGGAGATCTGTGGTCTTGGGGAATGGAAAGGGGACTTGGCCTTTGTCCAGATGCTAGTTTTACTGGAACGGACACCGGGGATGCTATATCTCCCCTATCCATCTTCTGTAATGGGTCTGCATCACCAAAATTTTTGGATCCTGTTCAAGTTGCTTGTGGGGCTGCTCATACTGTTATAGTTGCACATAATGGATATAAATTGTGGTCGTGGGGACGAGGAAGAAGCGGGGTTCTGGGAAATGGTAAGACAGTCGATTGTTTTACTCCCACGATCGTCTTGTGGCCTCCACTTGATGAGGATTTCAATCAAGAGGGAACTGAAACCAAAAGCGAGGAAGAAAAAGTTGAAGAAAATAAAACCGAGGAAGTAACCGAAGAAAATAAAAAGCTATTAATAGCAATGGAGGAGATAAAACTTCTTCAAGACAAGTTATCCATCATGGAACGGTATGCAAGCTTTCTTCATGGCTCGATATTTGGAAAACCTTTCCAAGAGGGAGATATCCCACTCTCATTGCGAAATTCTGGTTATTTCGACATTGCTAAGGAATGGGAAAACATGTTAGAGTCAACAGATCGCCCAAATCTTTTGAGGTTGGAGGTGGTCTATCAAAATATGCTGGTAAGTATCAAAGACAAGATAATGAAGAAAAGGGTTCAGGAGCTTGTGAAGGAGTTTCTTCAATCATCGACGTCCTCAAATTAGTGCTGTAATCTGAGAGGCACTGAAGCTATCATTAATCAGGTATCAAAAAGTCGAACATCTTTTAAGTTATTCTGCTTTTCAAGTTTGCCATCAAAGATTATCAGTAATATTGTACAACAGATTGTAGGTTATGTAACTTCTAAATAGCCTGCCCTTTTTGGGCCTGATGTTTAAGTTCTGTAAAAGTGCATCAATATGATTTCCAAAGCCATAGTTGATATTTTTAATA 2224 44.2 MEESGTRPSAAKLSGKVVAIAAGEAHTLVLTGDGSVYSWGRGMFGRLGTGAEADELFPVRLKLGSEDKNLRAVAIAAGSYHSLALADDGSVWCWGYNIYGQLGFDGGNSATPCLLKQFLELESPESLTEESGSKSKESLKICDIKAGGLISFAIDDLGALWMWGNCPKPDSEDEVGLSYVSSFTPSPVWEFHGHTVVKVACGNAHIVALVSVGETYNKGGDLVCYSWGDNSHGQLGLGDGDGRPRPQIIETFNEASPWAVYEVACGAFHTALLTRRKRSCDDLESVCWTFGLGENGQLGHGTTQNELLPKPVKELPQSVSLISVDCGLFHTSVVSSDGDLWSWGMERGLGLCPDASFTGTDTGDAISPLSIFCNGSASPKFLDPVQVACGAAHTVIVAHNGYKLWSWGRGRSGVLGNGKTVDCFTPTIVLWPPLDEDFNQEGTETKSEEEKVEENKTEEVTEENKKLLIAMEEIKLLQDKLSIMERYASFLHGSIFGKPFQEGDIPLSLRNSGYFDIAKEWENMLESTDRPNLLRLEVVYQNMLVSIKDKIMKKRVQELVKEFLQSSTSSN 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21648474 21651602 - XM_039029359.1 Bhi04g00858 32467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00858 571 Gene3D - 3 221 IPR009091 -
Bhi04g00858 571 Gene3D - 222 475 IPR009091 -
Bhi04g00858 571 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 4 568 - -
Bhi04g00858 571 PRINTS Chromosome condensation regulator RCC1 signature 35 51 IPR000408 -
Bhi04g00858 571 PRINTS Chromosome condensation regulator RCC1 signature 72 85 IPR000408 -
Bhi04g00858 571 PRINTS Chromosome condensation regulator RCC1 signature 91 107 IPR000408 -
Bhi04g00858 571 PRINTS Chromosome condensation regulator RCC1 signature 199 215 IPR000408 -
Bhi04g00858 571 PRINTS Chromosome condensation regulator RCC1 signature 327 345 IPR000408 -
Bhi04g00858 571 PRINTS Chromosome condensation regulator RCC1 signature 397 418 IPR000408 -
Bhi04g00858 571 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 75 85 IPR000408 -
Bhi04g00858 571 MobiDBLite consensus disorder prediction 439 458 - -
Bhi04g00858 571 SUPERFAMILY RCC1/BLIP-II 11 314 IPR009091 -
Bhi04g00858 571 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 222 276 IPR000408 -
Bhi04g00858 571 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 263 273 IPR000408 -
Bhi04g00858 571 SUPERFAMILY RCC1/BLIP-II 259 429 IPR009091 -
Bhi04g00858 571 MobiDBLite consensus disorder prediction 435 458 - -
Bhi04g00858 571 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 4 568 - -
Bhi04g00858 571 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 158 212 IPR000408 -
Bhi04g00858 571 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 34 88 IPR000408 -
Bhi04g00858 571 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 89 157 IPR000408 -
Bhi04g00858 571 Pfam Regulator of chromosome condensation (RCC1) repeat 33 85 IPR000408 -
Bhi04g00858 571 Pfam Regulator of chromosome condensation (RCC1) repeat 288 333 IPR000408 -
Bhi04g00858 571 Pfam Regulator of chromosome condensation (RCC1) repeat 404 432 IPR000408 -
Bhi04g00858 571 Pfam Regulator of chromosome condensation (RCC1) repeat 225 273 IPR000408 -
Bhi04g00858 571 Pfam Regulator of chromosome condensation (RCC1) repeat 88 154 IPR000408 -
Bhi04g00858 571 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 285 337 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00858 - - - csv:101217770 998.808
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00858 Bhi-Chr4:21648474 Bhi04g00860 Bhi-Chr4:21648474 1.89E-07 dispersed
Bhi04g00858 Bhi-Chr4:21648474 Bhi04g00859 Bhi-Chr4:21648474 8.97E-16 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g284 . . . . . . . . . . . . . Car12g00232 . . . Bhi04g00858 . . . . . . . . . . . . . . . . . . . . . . . . . Bpe14g00520 . . Bma02g00084 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009895 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 3 1 1 33