Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00868 TCTTCTCTCATTTTTCCACCAAAATTCCTCCAAAAAAAAAAAAAAAAAAAAAACCCAAAGAAAAAAAGAAAAAAAGAAAAAAAAAAGAGAAAATTTTGTAATTCCCACACACCCAAATGGAAGCTCCTGAATATTTCCAGATCAATGGGTACTGTTCCCAATTCTCAACGCACTCCTCCTCCGACACCGACACTACCACCGCCACCGCCACTGCCGGACCGGAGCATTTCATCGTGGAAGAGCTTCTGGATTTCTCCAACGACGATGACGGCGTAGTTGGCGACGGTGGAGGATTGTTTTACAATACTAACAATGGGAATAATAATAACAATAATTCAACGGAATCTTCCGCCGTTACGGTGATTGAGAGTTGCAATTCGTCGTCGTTTTCAGGTTGTGAACCAAACTCGTCGTTTTTGGAAGACATTAGTGGCTCTAATTTAGCCGACGCTCATTTCTCCAGCGAACTCTGCGTTCCGTACGACGATTTAGCTGAGTTGGAATGGCTTTCACATTTCGTAGAGGAATCATTTTCCAGTGAGGACATGCAAAAGTTGGAACTAATCTCCGGAGTCAAAGTCAGATCAGACGAACCCACCAATTCCCGACAACCCACCGCCACCCGAAACGCCGCCGCAATTTTCAAACCCGATATCGTTTCGGTTCCGGCAAAAGCCCGTAGCAAACGCTCACGCGCCGTCCCATCCAATTGGAACAACTCCCGCCTCCTTCCTCTTTCTCCAACCACCGAACCCGAAATTACCGCCACAGCCGGACCACCCCACCCCATAAAAAAAAACCCTCCCAAGGCCGCGACAGCCAAGAAGAAGGACAGCCCGGAGGTCGGAGTGTCATCCGGCGAGGGGCGGAAGTGCATGCACTGCGCCACCGACAAGACGCCGCAGTGGCGGACCGGCCCAATGGGCCCGAAAACGCTGTGTAACGCTTGCGGCGTTCGCTACAAATCCGGTCGCCTGGTGCCGGAGTACCGCCCCGCCGCTAGCCCCACCTTCGTTTTAACCAAACACTCCAATTCTCACCGGAAAGTTTTGGAGCTCCGGCGGCAGAAGGAGCTTCTTAGAGCCCAACAACAGCAACAACAACATTTGCTTTTGGATCATCATCAAGATATGATCTTTGATGCATCCAACGGTGATGATTATCTCATTCATCAACATATGGGCCCTGATTTCCGGCAGCTGATCTGACCGCCGCCCGCCGCCGCTAGGGGTAGAGTTCGGCCAATCTGATTCATTTTGGGTTTTTTCCCCCTGAAATTTTTA 1283 49.88 MEAPEYFQINGYCSQFSTHSSSDTDTTTATATAGPEHFIVEELLDFSNDDDGVVGDGGGLFYNTNNGNNNNNNSTESSAVTVIESCNSSSFSGCEPNSSFLEDISGSNLADAHFSSELCVPYDDLAELEWLSHFVEESFSSEDMQKLELISGVKVRSDEPTNSRQPTATRNAAAIFKPDIVSVPAKARSKRSRAVPSNWNNSRLLPLSPTTEPEITATAGPPHPIKKNPPKAATAKKKDSPEVGVSSGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELLRAQQQQQQHLLLDHHQDMIFDASNGDDYLIHQHMGPDFRQLI 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21889062 21891655 + XM_039030378.1 Bhi04g00868 32477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00868 363 PANTHER GATA TRANSCRIPTION FACTOR 1 363 - -
Bhi04g00868 363 PIRSF Txn_fac_GATA_plant 21 342 IPR016679 GO:0003677|GO:0005634|GO:0045893
Bhi04g00868 363 Gene3D - 246 297 IPR013088 GO:0006355|GO:0008270
Bhi04g00868 363 CDD ZnF_GATA 252 299 IPR000679 GO:0006355|GO:0043565
Bhi04g00868 363 ProSiteProfiles GATA-type zinc finger domain profile. 247 283 IPR000679 GO:0006355|GO:0043565
Bhi04g00868 363 Pfam GATA zinc finger 253 286 IPR000679 GO:0006355|GO:0043565
Bhi04g00868 363 MobiDBLite consensus disorder prediction 193 215 - -
Bhi04g00868 363 MobiDBLite consensus disorder prediction 186 248 - -
Bhi04g00868 363 ProSitePatterns GATA-type zinc finger domain. 253 278 IPR000679 GO:0006355|GO:0043565
Bhi04g00868 363 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 249 311 - -
Bhi04g00868 363 SMART GATA_3 247 297 IPR000679 GO:0006355|GO:0043565
Bhi04g00868 363 PANTHER GATA TRANSCRIPTION FACTOR 1 363 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00868 - - - csv:101205219 488.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00868 Bhi-Chr4:21889062 Bhi09g00450 Bhi-Chr9:9668213 1.02E-86 dispersed
Bhi03g00894 Bhi-Chr3:16827000 Bhi04g00868 Bhi-Chr4:21889062 2.28E-36 transposed
Bhi11g01509 Bhi-Chr11:43730845 Bhi04g00868 Bhi-Chr4:21889062 6.12E-39 transposed
Bhi04g00868 Bhi-Chr4:21889062 Bhi09g02574 Bhi-Chr9:69908601 3.21E-125 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00868 . 88 363 C2C2-Gata Transcription Factor Family AT5G25830 54.1 3.1e-70 263.1
Bhi01g01062 CCT 2 147 C2C2-Gata Transcription Factor Family AT3G06740 61.0 6.0e-37 151.4
Bhi03g00894 CCT,ECH 97 274 C2C2-Gata Transcription Factor Family AT4G36240 50.5 6.4e-41 165.2
Bhi11g00074 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.7 2.1e-137 486.9
Bhi05g00589 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.0 1.1e-133 474.6
Bhi11g00074 . 1 515 C2C2-Gata Transcription Factor Family AT5G47140 51.0 1.6e-120 430.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
914 PF00320 GATA 1.90E-15 CL0167 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00868 Bhi_Chr04 FPKM 12.840203 17.238592 3.984647 4.448411 2.577331 2.430162 3.959648 3.420436 5.18154 4.517358