Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00896 CGATTATTAGATCATAAATGCAAGGAAAAGGAATTAAAATAGAGTTTGGAAAAAGGAGTATATAGTGAATTAATTGTTCCTTTGATTTCCCGCTTTTTTCTTTTTTTGTTATTATATATTTATTTGTAGAGGCAATGGGTGTAATTTAATTGAAAACTGTAGGGGCAGTTTCGGCTGTTGATGATGCTCAAGCTGACGGCAACCGCCACCTTTCCTTCCTTCTTCGGCGTTCGAGGATTCGTAAACTACAGTTACGCAACGGAGAGATTCCGAGAGAGACTCAAAGAGAGTACCGGCGAAAGTGTGGGACAGGTTGCGCATGCTAGCTAGAGCTAGAAAATGGTGATGCCGGAGTCGTCTGAGGCCCACCGGACCGCGTCTCGTCGAGCGAATCGCCCGCCGACTCGACCTCTAGTCGGACCTAGGGTTCCGCTGAGACGGTTACTCCGTGTCGCGTCTATCGCATGTGGAATTCAATTCGGTTGGGCTTTGCAGCTCTCTCTTCTCACTCCTTATATTCAAGAGCTCGGTATTCCTCACGCTTGGTCTAGTCTCATATGGCTCTGCGGACCGCTTTCTGGCCTCCTTGTCCAGCCGCTTGTTGGTCATATGAGCGATCACTGCACCAGCCGATACGGCCGCCGGAGGCCGTTCATCGTCGCTGGTGCGCTTTCCATACTACTTGCCGTTTTGATTATCGGTCACTCGGCGGACCTCGGTTGTTTGATGGGGGACAGAGGTGATGTTAGGCCTCGTGCGATTGGGTTCTTTGTAGTTGGTTTTTGGATTCTCGACGTTGCTAACAACGTCTCCCAGGGTCCTTGTAGAGCTCTGCTTGCTGATCTTACCGGAAGGGATCATCGAAGGAATCGAGTGGCAAATGCTTATTTTTCTCTATTTATCGCTATTGGTAATGTTTTTGGATATGCGACTGGATCTTTTAGTGGCTGGTACAAGATCTTCCCGTTTACTCTTACCTCTGCGTGTTCTGTTAATTGTGCAAATCTCAAGTCAGCTTTCTTGATTGATATCATGTTCATTGCAATTACAACATATTTGAGTGTATCAGCAGCTCAAGAGTTACCTCTAGTTTCAAGTGACAGGTCCTCCCTGGTTTTAGAAGAAGGTATGGGGCAGTCAAGTCATGCTTCAGAAGCATTTTTCTGGGACTTGTTTCGCACTTTTAGACACTTCTCTGGGTATATATGGGTAATTTTGCTCGTCACTTCCCTGACATGGATAGCATGGTTTCCATTTATTCTCTTTGATACTGATTGGATGGGTAGAGAGATTTATGGTGGCAAGCCAAATGAAGGACAGGCTTATAGTTCTGGAGTCAGAATGGGAGCATTTGGTCTGATGTGTAACTCTGTTGTCCTCGGAATAACTTCATTACTTATGGAGAAGCTGTGCAGAAAGTGGGGTGCTGGTTTCATATGGGGAATCTCTAATATTTTTATGGCTCTATGTTTTCTTAGTATCCTGGTTGTAACGTATGTGGCAAACAATATGGGCTATATAGGTCATAATCTCCCACCAAATAGTATTGTATCAGCTGCATTGATTATTTTTGCTCTTCTTGGCGCCCCTTTGGCAATTACTTACAGTGTTCCATATGCCATGATCTCCTCACGTGTTGAATCTTTACAACTTGGTCAAGGTTTGTCTGTGGGTGTCTTGAACTTGGCAATAGTTTTCCCACAGTTGGGAAAAGTAACTTGAGGTTTAAGTTCGGCACTGTCTGATAACAACAGGCATTAGAAGTGTTGGTTCGTATTATTTTGAAGCTATGCACATTATGGACGTCAATTAAAGGGACCAGTTAATCTATAAAATATCTTTTAATGACCGCATAAAAATCATGGATGAAATGCATGAAAAATCTAATGTTGGATGTGGTATAACTTATAAGGGCAGTTAACTTGGGAGAAAGAGAGCCCTCCCAACTTGTATTTGCAAGAAGGAAAATGCTGGAGGTCTTATTCTGAACTAATGAAGGAACATTACAGTTTGTGTTCTCGGTCTAATCATTTGACTTTGTCAAATGAGAAAGTGTCAAATTTCGACTGGCCTCTTTCTGGGACATACTAAGACAACTTCTCTTGAAAATTCAGTGGTGGATATCCCCGTTAGTCAATTTACTTTTTGTCTTGGGAAAAGATTTAGGGGATGCAGATGAAAATATATTTCCATGTGGAAGAGATCACAGGTAGAGGATTAGAGTTTGTCCATATCTGTAGTCCTGCAGTCACTTTCCAATATGTAATGGATGATAATAGAAATAAAATAATTTGACATAATACTTTGTTGTTTCTTCAAAACTTTTTGATCGTTAGTGGACCTCTCTGTGGGATTCAATCCAGCTGAAAGATTTGGCTGTTGCCTTAGGTAACATTTTCAGGAACATATATTGATCTGTAAGATATGGTAGAGACTTTGAGGGCCACATAGTAGTAAAACATTTTAACCTTGAACAGTGAAGCATTAGCTGAACATATTTTTTTCATAGCCACATGTTTTGGTTCTTTTTTTCCCCTTCTTTTGAGATTTTGTCGCTTGATATTAATTATTTTCACCTCAATTTCAGTTGCATTCTTGTTTTAAACAAACACAAATTGTATTTCTGGAACCCATGTATTCTATCTATACATATATAATTCCACTTGGCTTTTCATGTGAAGTGGGTTCTTCTCTATTGGAGCTGATATCATTTGTTAATAACAAAATTGAACTCACTTGCCACTTTTTTTCTCTGCCGTGTTTTCTTATCTCAATTTTCATGCCAAACTGTGCACTTCTCAATTAAATTTTGAGGAAGGATACAGATATAGTTGCTTTTCATAAATATGATAGTCTAGGATTACAGCAGTGACTTAAAGGTTAGCATTCTGCGGGACAATCATGTTTCACAAAGCCATTAATTTTCTTGGTCCCATACATTGTGCTTCTGTTGGCTTCAGAACAGAAGAGCTGGGTGGGGCTGGGTGCTTTGTTTGTTGAGAGAGTAATTGAGTGAGACATTCTGCAAGACTCAAGCTTGTTTGGGATTGCAATCACAATTTTTTCTTTTTCATTTGTTTTTCCTTAATATATAATATATATATATCGACCTGAGGCTTGATCTTAAATAATAAAAGTCAAGCATTTAGTCTCTAGTGCATGTCATGTCCTGAAAATGTTGTATATGCTGTTATACTTGCAACCCAATTGTTTTTCCAATGGACTGGAGGGATTCTATCATCTGGTATTAAGAAATTCTTTTAACTAATTGATCTAATATGCGTTAAGCTATTTCAATCACAATACTTGCTCTCATGATGACATGTACAAGAAGTTGTGGTAGAATGTTATTAGTAACTTGTCAACCATTTTTTTCTTAACCTTTTCAAAGAGATTTTATTCACTAATTTTATTGTTTCTGA 3422 39.68 MVMPESSEAHRTASRRANRPPTRPLVGPRVPLRRLLRVASIACGIQFGWALQLSLLTPYIQELGIPHAWSSLIWLCGPLSGLLVQPLVGHMSDHCTSRYGRRRPFIVAGALSILLAVLIIGHSADLGCLMGDRGDVRPRAIGFFVVGFWILDVANNVSQGPCRALLADLTGRDHRRNRVANAYFSLFIAIGNVFGYATGSFSGWYKIFPFTLTSACSVNCANLKSAFLIDIMFIAITTYLSVSAAQELPLVSSDRSSLVLEEGMGQSSHASEAFFWDLFRTFRHFSGYIWVILLVTSLTWIAWFPFILFDTDWMGREIYGGKPNEGQAYSSGVRMGAFGLMCNSVVLGITSLLMEKLCRKWGAGFIWGISNIFMALCFLSILVVTYVANNMGYIGHNLPPNSIVSAALIIFALLGAPLAITYSVPYAMISSRVESLQLGQGLSVGVLNLAIVFPQLGKVT 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22565560 22571204 + XM_039028804.1 Bhi04g00896 32505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00896 460 SUPERFAMILY MFS general substrate transporter 33 445 IPR036259 -
Bhi04g00896 460 Pfam MFS/sugar transport protein 48 195 - -
Bhi04g00896 460 MobiDBLite consensus disorder prediction 1 25 - -
Bhi04g00896 460 TIGRFAM GPH_sucrose: sucrose/H+ symporter 30 456 IPR005989 GO:0005887|GO:0008515|GO:0015770
Bhi04g00896 460 PANTHER SUCROSE/H+ SYMPORTER, PLANT, MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED 12 456 - -
Bhi04g00896 460 PANTHER SUGAR TRANSPORTER 12 456 - -
Bhi04g00896 460 Gene3D MFS general substrate transporter like domains 32 456 IPR036259 -
Bhi04g00896 460 CDD MFS_SLC45_SUC 35 456 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00896 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:101220384 829.706
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00896 Bhi-Chr4:22565560 Bhi06g00882 Bhi-Chr6:22849182 4.64E-145 dispersed
Bhi04g00896 Bhi-Chr4:22565560 Bhi04g00897 Bhi-Chr4:22565562 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi06g00883 . 12 495 Sucrose Transporter Gene Family AT1G22710 61.1 7.0e-178 621.3
Bhi06g00882 . 12 495 Sucrose Transporter Gene Family AT1G22710 61.1 7.0e-178 621.3
Bhi04g00897 . 32 496 Sucrose Transporter Gene Family AT1G22710 52.2 3.4e-140 496.1
Bhi04g00896 . 32 456 Sucrose Transporter Gene Family AT1G22710 51.7 1.4e-125 447.6
Bhi06g00883 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.2 9.5e-172 600.9
Bhi06g00882 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.2 9.5e-172 600.9
Bhi04g00897 . 25 496 Sucrose Transporter Gene Family AT2G14670 52.5 1.7e-136 483.8
Bhi04g00896 . 25 456 Sucrose Transporter Gene Family AT2G14670 52.3 4.3e-124 442.6
Bhi06g00883 . 8 409 Sucrose Transporter Gene Family AT1G66570 59.4 5.9e-144 508.4
Bhi06g00882 . 8 409 Sucrose Transporter Gene Family AT1G66570 59.4 5.9e-144 508.4
Bhi04g00897 . 25 424 Sucrose Transporter Gene Family AT1G66570 51.5 7.1e-113 405.2
Bhi04g00896 . 25 424 Sucrose Transporter Gene Family AT1G66570 51.5 7.1e-113 405.2
Bhi06g00848 . 153 605 Sucrose Transporter Gene Family AT2G02860 70.0 1.6e-184 643.3
Bhi06g00847 . 120 572 Sucrose Transporter Gene Family AT2G02860 70.0 1.6e-184 643.3
Bhi06g00883 . 8 479 Sucrose Transporter Gene Family AT5G06170 59.3 9.8e-161 564.3
Bhi06g00882 . 8 479 Sucrose Transporter Gene Family AT5G06170 59.3 9.8e-161 564.3
Bhi04g00897 . 31 496 Sucrose Transporter Gene Family AT5G06170 51.4 1.2e-131 467.6
Bhi04g00896 . 31 456 Sucrose Transporter Gene Family AT5G06170 51.0 2.4e-119 426.8
Bhi06g00883 . 17 479 Sucrose Transporter Gene Family AT5G43610 61.9 2.6e-169 592.8
Bhi06g00882 . 17 479 Sucrose Transporter Gene Family AT5G43610 61.9 2.6e-169 592.8
Bhi04g00897 . 31 496 Sucrose Transporter Gene Family AT5G43610 51.9 3.0e-133 473.0
Bhi04g00896 . 31 456 Sucrose Transporter Gene Family AT5G43610 51.4 2.0e-121 433.7
Bhi04g00897 . 18 503 Sucrose Transporter Gene Family AT1G09960 70.1 6.3e-203 704.5
Bhi04g00896 . 18 456 Sucrose Transporter Gene Family AT1G09960 70.1 3.6e-182 635.6
Bhi06g00883 . 18 489 Sucrose Transporter Gene Family AT1G09960 52.0 3.6e-134 476.1
Bhi06g00882 . 18 489 Sucrose Transporter Gene Family AT1G09960 52.0 3.6e-134 476.1
Bhi06g00883 . 12 495 Sucrose Transporter Gene Family AT1G71880 59.3 1.3e-168 590.5
Bhi06g00882 . 12 495 Sucrose Transporter Gene Family AT1G71880 59.3 1.3e-168 590.5
Bhi04g00897 . 31 507 Sucrose Transporter Gene Family AT1G71880 52.1 2.8e-134 476.5
Bhi04g00896 . 31 456 Sucrose Transporter Gene Family AT1G71880 51.7 2.5e-119 426.8
Bhi06g00883 . 17 495 Sucrose Transporter Gene Family AT1G71890 58.5 3.4e-164 575.9
Bhi06g00882 . 17 495 Sucrose Transporter Gene Family AT1G71890 58.5 3.4e-164 575.9
Bhi06g00883 . 12 495 Sucrose Transporter Gene Family AT1G71880 59.3 1.3e-168 590.5
Bhi06g00882 . 12 495 Sucrose Transporter Gene Family AT1G71880 59.3 1.3e-168 590.5
Bhi04g00897 . 31 507 Sucrose Transporter Gene Family AT1G71880 52.1 2.8e-134 476.5
Bhi04g00896 . 31 456 Sucrose Transporter Gene Family AT1G71880 51.7 2.5e-119 426.8
Bhi06g00883 . 12 495 Sucrose Transporter Gene Family AT1G22710 61.1 7.0e-178 621.3
Bhi06g00882 . 12 495 Sucrose Transporter Gene Family AT1G22710 61.1 7.0e-178 621.3
Bhi04g00897 . 32 496 Sucrose Transporter Gene Family AT1G22710 52.2 3.4e-140 496.1
Bhi04g00896 . 32 456 Sucrose Transporter Gene Family AT1G22710 51.7 1.4e-125 447.6
Bhi06g00848 . 153 605 Sucrose Transporter Gene Family AT2G02860 70.0 1.6e-184 643.3
Bhi06g00847 . 120 572 Sucrose Transporter Gene Family AT2G02860 70.0 1.6e-184 643.3
Bhi04g00897 . 18 503 Sucrose Transporter Gene Family AT1G09960 70.1 6.3e-203 704.5
Bhi04g00896 . 18 456 Sucrose Transporter Gene Family AT1G09960 70.1 3.6e-182 635.6
Bhi06g00883 . 18 489 Sucrose Transporter Gene Family AT1G09960 52.0 3.6e-134 476.1
Bhi06g00882 . 18 489 Sucrose Transporter Gene Family AT1G09960 52.0 3.6e-134 476.1
Bhi06g00883 . 17 495 Sucrose Transporter Gene Family AT1G71890 58.5 3.4e-164 575.9
Bhi06g00882 . 17 495 Sucrose Transporter Gene Family AT1G71890 58.5 3.4e-164 575.9
Bhi06g00883 . 17 479 Sucrose Transporter Gene Family AT5G43610 61.9 2.6e-169 592.8
Bhi06g00882 . 17 479 Sucrose Transporter Gene Family AT5G43610 61.9 2.6e-169 592.8
Bhi04g00897 . 31 496 Sucrose Transporter Gene Family AT5G43610 51.9 3.0e-133 473.0
Bhi04g00896 . 31 456 Sucrose Transporter Gene Family AT5G43610 51.4 2.0e-121 433.7
Bhi06g00883 . 8 409 Sucrose Transporter Gene Family AT1G66570 59.4 5.9e-144 508.4
Bhi06g00882 . 8 409 Sucrose Transporter Gene Family AT1G66570 59.4 5.9e-144 508.4
Bhi04g00897 . 25 424 Sucrose Transporter Gene Family AT1G66570 51.5 7.1e-113 405.2
Bhi04g00896 . 25 424 Sucrose Transporter Gene Family AT1G66570 51.5 7.1e-113 405.2
Bhi06g00883 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.2 9.5e-172 600.9
Bhi06g00882 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.2 9.5e-172 600.9
Bhi04g00897 . 25 496 Sucrose Transporter Gene Family AT2G14670 52.5 1.7e-136 483.8
Bhi04g00896 . 25 456 Sucrose Transporter Gene Family AT2G14670 52.3 4.3e-124 442.6
Bhi06g00883 . 8 479 Sucrose Transporter Gene Family AT5G06170 59.3 9.8e-161 564.3
Bhi06g00882 . 8 479 Sucrose Transporter Gene Family AT5G06170 59.3 9.8e-161 564.3
Bhi04g00897 . 31 496 Sucrose Transporter Gene Family AT5G06170 51.4 1.2e-131 467.6
Bhi04g00896 . 31 456 Sucrose Transporter Gene Family AT5G06170 51.0 2.4e-119 426.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010988 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00896 Bhi_Chr04 FPKM 0.545833 0.785258 1.326675 1.897813 1.349659 2.7624 1.479662 0.937579 0.812164 0.827878