Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00900 AGATGCGAGGGCCTAGAGAGAGCGAGCTGCCTGTATTTCTCAGAGAAAAAGCAGAGATCTTATTGGGTCTATTGATAACTAAAGAGAAGAAAGCCGAAGCCAACATTAAAATTTTAATAAATACCCATTCCAAACACCAACCAAGAACAATCAACAAACCAACCAATTTTTTCCCCCAACATTGTCTTCTTCCTCTTCTTCTTCTTCTTCTACTTTTTGCTTCTCTTTCTGATGATCCCCATGCCATATTCTGCCTTTCTTATTTTGTCCCCTTTCTCCCATAATTCAGATCTATCTACTCTCCTTCTTTCATTAAATTAAACCCTTTTTCTTTTTCTTGCTCTAAACTATATTCCCTCCTCTTCTTCTTCTTCCTCTTCTTCTTCTTCCCCCAAATGGGTACTGGTTGGAGGAAAGCGTTTTGTACTACCATTTCTCGAGATTCAGAATCTAATAATGTCTCTGAGAAACAGAGGAGCTCTGGCACTCCAAATCCCAGCCCTAGAAGCTGTGTTCGATTGGGTTTCTTCAGCAATCCTTCTACTCCACGATTGCAGTCTCATCAGCCATTGAGTAGTCCAGGTCTTCGCTGCCGTACAGCTCAAGATGCCACTGTCAATCAGAGTCCGACTCTCCATTGCAAGACCTCCTCGTCCTCTTCATCAACTCCTAAATCTGCTAAATCCCAACGAGGGGTTTTGGGTTCTAATCCTTCCTCTCCTCGTTCCCCTCTGAAACTCTCTCTTTTCAAGAACAGCTTTAAGTTCAGAAGTAGCTGTGGAATCTGTTTGAGTAGCGTGAAGACAGGGCATGGGACGGCGATTTACACGGCGGAGTGTTCGCATGCTTTTCATTTCCCTTGTATAGCCGCTCATGTCAGAAACCACGCCACTCTGGTTTGCCCTGTCTGCAATACCACATGGAAAGACGTTCCTCTGCTCGCCGCCCATAAGAATTTGGGCCCACTAACCCAGCACGATATCAAACCCAAGATTGAAGATAAAACCATGATTGAATCTTCCCCCAGAGCCTTTAAATCCAAACAAGACCCAAAAGAAAAGCCCTCGGAATTCAGGTCCTACGACGACGATGAACCCCTTTTGTCCCCTACCTCCGGCGGCCGGATTATCCCCATCCCAGAAGCCGATGAGAACCAAGACGATGTCGAGGAATTTCAAGGCTTCTTTGTACACCCAAAGCCGCCTTCCAGTGCGGCTAAATCTTCAATTCAGAGGACCAATGTGCAGGTCCGACTCCTCCCTGAAACGGCGTTGATTTCATCTGGACACGCCCACGAGACCTACGCGGTGGCTCTGAAAGTAAAAGCGCCACCGCCACATCCGGCTAGAAACAGAGCCAATGCCAATTTACTAGACCCATCCCGTCGTGCGCCGATCGATTTAGTGACGGTGCTGGATGTGAGTGGAAGCATGACGGGGCCGAAATTGATGATGCTGAAACGCGCCATGCGATTGGTCATTTCGTCGTTAGGCTCGTCGGACCGGCTCGCCATTGTCGCTTTCTCGGCCACTCCTAAAAGGGTGTTGCCGTTGAGGAGGATGACGGCTCAAGGCCAACGCGCCGCCCGGCAGGTGATTGACACGCTGGTCTGCAGCCAAGGAACCAGCGTGGGGGAAGCATTGAGAAAAGCCACAAAAGTACTCGAGGACCGGCGAGAGAGAAACCCGGTGGCCAGTATCATGCTTTTATCCGACGGCCAAGATGAGCGAACCCATTCAAATCAACGGCAGATGACACGACACGAGTCATCCACACGGTTCGCCCATATAGAAATTCCGGTTCACGCGTTTGGGTTCGGGAAGAGCGGCGGATACTGTCAAGAACCGGCGGAGGACGCGTTTGCCAAATGCGTGAGTGGGTTATTAAGCGTGGTGGTTCAAGACCTCCGTATTCAACTCGGGTTCCCGACCGGTTCATCTCCGGTTGTGATTTCCGCTATTTATTCCTGTACAGGCCGGCCCACGGTTTGCAGCTTGGGTTCGGTCCGGCTGGGCGATTTATACGCGGAGGAGGAAAGGGAATTACTCGTGGAGTTGAAGATTCCAACCTCGGCTGCTGGGACCCACCACGTGATGACGATGCAGTGCCTTTACAAAGACCCATCCACACAAGAAGTAGTGTACAGCCGAGAACAAGACATCCTTATCGCACGACCGGTAGCCGTGGGATCATCCGCTCCGAAGATCGAACGGCTAAGAAACATGTTCATAACGACTCGCGCTGTGGCGGAATCCAGGAGATTAATTGAGTACGACGATCATACAAGCGCACATCATTTACTCGCGTCGGCGCGTGCGTTACTAATCCAATCCGGATCATCAAGTGCTGACGTGTACGTGCGTGAGCTGGAAGTTGAGCTGGCAGAACTCCATTGGCGAAGGCAACAACAATTCGAAATACACCAGCAGCAACAACATCAACAACATTTAGTCACGACGACGCCGCGTAGGCGTGGCGGTGGGGATAAGGAAAATCCGACGTTGGTGGATGAAAACGGAGAGCCGTTAACACCGACATCGGCGTGGAGGGCGGCGGAGAAGCTTGCCAGAGTGGCGATTATGAAAAAATCGTTGACGAGTAGAGTGGGGGATTTACACGGGTTTGAAAACGCCAGGTTCTAGAAGAGGCAGAGGATTCACTGACTGTAAAATTTGGTTAATTTTGGAAAAGGGTAATGAGAAATTGAAAAGGGAAAGGGAAAAAGTATAGTACAGAAATGGATTTGTGGGGGGCAAAGTGGGGTTTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAAGCCCCACTGATTAGACTGTCTTATGCTTTTCATCAACTCCACACATACACTCAGCTTTCTGTAGCTTTCTTTCATGTAGATTAGAGGAAAATGGGATTACCAAAGCAGAAGCAACCATAAACGTTTTATTTCAAAATGACCCTTTTTTCAATTTAAGCAAAATATTTTTATTTTTA 2977 48.44 MGTGWRKAFCTTISRDSESNNVSEKQRSSGTPNPSPRSCVRLGFFSNPSTPRLQSHQPLSSPGLRCRTAQDATVNQSPTLHCKTSSSSSSTPKSAKSQRGVLGSNPSSPRSPLKLSLFKNSFKFRSSCGICLSSVKTGHGTAIYTAECSHAFHFPCIAAHVRNHATLVCPVCNTTWKDVPLLAAHKNLGPLTQHDIKPKIEDKTMIESSPRAFKSKQDPKEKPSEFRSYDDDEPLLSPTSGGRIIPIPEADENQDDVEEFQGFFVHPKPPSSAAKSSIQRTNVQVRLLPETALISSGHAHETYAVALKVKAPPPHPARNRANANLLDPSRRAPIDLVTVLDVSGSMTGPKLMMLKRAMRLVISSLGSSDRLAIVAFSATPKRVLPLRRMTAQGQRAARQVIDTLVCSQGTSVGEALRKATKVLEDRRERNPVASIMLLSDGQDERTHSNQRQMTRHESSTRFAHIEIPVHAFGFGKSGGYCQEPAEDAFAKCVSGLLSVVVQDLRIQLGFPTGSSPVVISAIYSCTGRPTVCSLGSVRLGDLYAEEERELLVELKIPTSAAGTHHVMTMQCLYKDPSTQEVVYSREQDILIARPVAVGSSAPKIERLRNMFITTRAVAESRRLIEYDDHTSAHHLLASARALLIQSGSSSADVYVRELEVELAELHWRRQQQFEIHQQQQHQQHLVTTTPRRRGGGDKENPTLVDENGEPLTPTSAWRAAEKLARVAIMKKSLTSRVGDLHGFENARF 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22607353 22610428 - XM_039030203.1 Bhi04g00900 32509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00900 748 CDD RING-H2 128 173 - -
Bhi04g00900 748 MobiDBLite consensus disorder prediction 676 712 - -
Bhi04g00900 748 SUPERFAMILY vWA-like 333 488 IPR036465 -
Bhi04g00900 748 Pfam RING-like zinc finger 128 157 IPR001841 -
Bhi04g00900 748 SUPERFAMILY RING/U-box 127 178 - -
Bhi04g00900 748 SMART ring_2 128 172 IPR001841 -
Bhi04g00900 748 SMART VWA_4 333 512 IPR002035 -
Bhi04g00900 748 Gene3D von Willebrand factor, type A domain 335 495 IPR036465 -
Bhi04g00900 748 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 748 - -
Bhi04g00900 748 MobiDBLite consensus disorder prediction 200 232 - -
Bhi04g00900 748 CDD vWA_C3HC4_type 334 501 - -
Bhi04g00900 748 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 232 IPR013083 -
Bhi04g00900 748 Pfam von Willebrand factor type A domain 336 442 IPR002035 -
Bhi04g00900 748 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 3 748 - -
Bhi04g00900 748 ProSiteProfiles VWFA domain profile. 335 475 IPR002035 -
Bhi04g00900 748 MobiDBLite consensus disorder prediction 200 243 - -
Bhi04g00900 748 MobiDBLite consensus disorder prediction 13 110 - -
Bhi04g00900 748 ProSiteProfiles Zinc finger RING-type profile. 128 173 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00900 - - - csv:101220853 1333.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00733 Bhi-Chr3:13706432 Bhi04g00900 Bhi-Chr4:22607353 1.29E-39 dispersed
Bhi03g01118 Bhi-Chr3:22689006 Bhi04g00900 Bhi-Chr4:22607353 0 dispersed
Bhi04g00900 Bhi-Chr4:22607353 Bhi10g00521 Bhi-Chr10:11791532 6.61E-94 dispersed
Bhi04g00900 Bhi-Chr4:22607353 Bhi04g01353 Bhi-Chr4:34136673 2.87E-88 transposed
Bhi04g00900 Bhi-Chr4:22607353 Bhi08g00186 Bhi-Chr8:7107407 2.67E-88 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g562 Blo01g01789 . Bda01g00923 . Bpe02g00152 . . Bma01g02574 Cmo05g00592 . . . . . Sed04g0234 . . Bhi04g00900 Tan02g2512 Cmetu03g0168 . Hepe10g0402 . . Cla08g01186 Cam08g1651 Cec08g1227 Cco08g1346 Clacu08g1347 . Cre08g1133 . . Cone17ag1157 Cone20ag0572 . . . . Blo17g00085 Blo18g00728 . Bda13g01346 Bpe02g01168 Bpe14g00499 Bma01g01363 Bma02g00100 . . . . Cma05g00566 . . . . . . . . . . . . . . . . . . Lsi08g01049 Csa02g02233 Chy03g01284 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001939 4 2 3 5 5 2 0 2 2 2 2 2 4 0 2 3 2 2 0 2 2 2 2 2 1 1 2 3 2 3 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00900 Bhi_Chr04 FPKM 9.39366 11.031226 4.125854 4.333513 13.412896 12.589972 14.026943 3.191516 2.761735 3.472684