Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00903 ACTGCAATTTTTATGCCGTCCAGGTACTAGGGCAGAGCCTCCATTAGAGCTTGAGAGAAAGCTTGAGAGAGAGAGATGGAGCTTGACGAACATGTTTTCTTAGAGGAGTTAATGGCTCTACGAAGAGATTCAAATTGGGAAGCCATTCCAAACGAAATCACCGACCTCTGCTCAAATGCTTGGCCATTCGATTACTGTTTCGATCAAACCACTTTGAATTTCCCCCCAAATTCTTCTTCAGAACCTCTCTCCGCTCAAAATCTCCACGAATTCTACCATCCTTTAGCAAATGAGTTCTCAGTACCACAAATACCTGATTCCGCCTTTACCGTCATGGAAGTAGCAGCAGCAGCAGCAGCAGCCGCGCCTCTGCCATTTCAACCAGAGCATCCGAATGTAGAGCGAGAAGAAGAGGAAGAGCAATTAGGTTTTCTCGCGGATGAGATTCAGAATATGGAGGCAGTTCAAGTTGAATCAGCGTGTAAAATGGAGCCGAATCAATCTCCAGAAGAAGAACTCCAGGTTTTCAACATCGGAACATGCTCCTCCATGGACCGAAAGAACAGAGGGAAGAAATTGCAAGGACAACCGTCAAAGAATCTGATGGCGGAGAGAAGGAGAAGGAAGCGGTTGAACGATCGACTTTCAATGCTCAGATCCATTGTCCCGAAGATCAGTAAGATGGACAGAACAGCGATTCTGGCAGATGCGATTGAGTATATGAAAGAATTGCTAGAGAAGATCGGGAATCTGCAAAGCGAAGTGGAAGGATCAAATCCGAGGATGAATTCATTGAAGAACACAAAACTGAGTGAATGCGTAGTGAGGAATTCACCAAAATTCGAAGTGGAAACTAGAAATGGGGACACGAGAATCGAGATTTGCTGTGCGGGAAAACCAGGATTGGTATTATCAACGGTGAATACACTCGAAGCATTGGGGCTTGAGATTCAACAATGTGTAATTAGCTGCTTCAATGACTTCGCATTGCAAGCCACTTGTTCTTCTCAGGAACTGAAGCAGAGAACAGAACTGAAGCAGAGAACAGAACTGAAGCCTGAAGAATTGAAGGAAGCTTTATTTAGGAATGCAGGTTATGGAGGAAGCTGCTTGTAGATTTCTTCTTCTTCATCCTTTTTCTTTTTTATTTTTTTAATTAAAAAAAT 1166 43.48 MELDEHVFLEELMALRRDSNWEAIPNEITDLCSNAWPFDYCFDQTTLNFPPNSSSEPLSAQNLHEFYHPLANEFSVPQIPDSAFTVMEVAAAAAAAAPLPFQPEHPNVEREEEEEQLGFLADEIQNMEAVQVESACKMEPNQSPEEELQVFNIGTCSSMDRKNRGKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELLEKIGNLQSEVEGSNPRMNSLKNTKLSECVVRNSPKFEVETRNGDTRIEICCAGKPGLVLSTVNTLEALGLEIQQCVISCFNDFALQATCSSQELKQRTELKQRTELKPEELKEALFRNAGYGGSCL 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22898922 22901594 - XM_039028582.1 Bhi04g00903 32512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00903 346 Gene3D - 162 234 IPR036638 GO:0046983
Bhi04g00903 346 MobiDBLite consensus disorder prediction 160 181 - -
Bhi04g00903 346 Coils Coil 110 130 - -
Bhi04g00903 346 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 346 - -
Bhi04g00903 346 CDD ACT_UUR-ACR-like 265 306 - -
Bhi04g00903 346 Coils Coil 209 229 - -
Bhi04g00903 346 PANTHER DNA BINDING PROTEIN 3 346 - -
Bhi04g00903 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 219 IPR011598 GO:0046983
Bhi04g00903 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 239 IPR036638 GO:0046983
Bhi04g00903 346 Pfam Helix-loop-helix DNA-binding domain 176 219 IPR011598 GO:0046983
Bhi04g00903 346 SMART finulus 176 225 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00903 Bhi-Chr4:22898922 Bhi08g01538 Bhi-Chr8:44167390 1.26E-38 dispersed
Bhi04g00903 Bhi-Chr4:22898922 Bhi04g00904 Bhi-Chr4:22898922 0 tandem
Bhi01g02001 Bhi-Chr1:45327898 Bhi04g00903 Bhi-Chr4:22898922 9.49E-38 transposed
Bhi04g00903 Bhi-Chr4:22898922 Bhi09g02536 Bhi-Chr9:68801824 1.67E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
917 PF00010 HLH 6.50E-10 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00903 - - csv:101221329 568.155