Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00925 ATCCATAGTTGAATTGGCTTGATATGAATCTTTGTATATATTGAGAAAATGAATCTTTATATTTTATCTCCATGAAAGTGGGGAATGATCTGTATGGATAAGCTTGAATTGAGAACGAGACGTTCGTCATAATAATTTTGCATATATAAAACCCAAAAACAAATGTAACAAGAAATTCAGTTGTGTATATAAGAAACTCCTCAACGCAGTCTGATCCTTTTCAGTTGGGGAAGGCGGGAAGCGAAATGGGTCGTCCAATTCGTGAGTTTTCGTTACAAAATTTTCAGCCCAAGAGCTTGCTGGGGTCGCCTAATTTCAGAAATGGCTGCGATTAGACCGACTCTAATCCAAAAGAATCCCTTCCTTTTTTCATCCTTTTCAGTTGGGAGAAGTTCTCTTTCTGTGAAGGAAGAAATGGACGAAACGCATCTGGAAGTGCCTTCAAATCTCATTCACGAGTTGGAGGTGAAAAAATTGGCTAAAGTGAAAGATGAACATAAGCTGTTTGATGAAATGCGAAGGAGATTTTTGAGTTTTAAGAAGCACAAGTACTTGGAAAATTTGGAGCATTTTCAAGCTCTTGCAGAACTGCAAGCCCCTAAGGTAATTGAGATGATGAGCAGGACCCTACGTTTTCTACTTGATTTGTTTTGCCTTCTTGTGTTGTTGTCCTGTTTTGACTATCTGCCATCACTTAAGTTCATTGTTTTAAAATTACCTTGGATATTGGACACAAGCTCACAAGTAGAACAGTTCATGGTGATTTCTTGTGTGGATTCTAGAGTATGCCCATCCAATATCCTTGGATTTCAACCTGGAGAAGCTTTCACAGTTCGTAATGTAGCAAACATTGTTCCACCATGGGAGAATGGACCAACTGAAACCAATGCAGCCCTTGAATTTGCAGTGAACACACTTGAAGTTGAGAACATTTTAGTCATTGGCCACAGTAGCTGTGCTGGAATCCAGAGCCTTATGAGCATGGAAGATAATGCACTCGACTCGAGCTTATTCTACCATGGTAGCTTTGTTCATAAATGGGTGGTGAATGCAAAGGCTGCTAAATTAAGAGCAAAAGCTGCTGGTGCACATCTTAGTTTTGACCAGCAATGTAAACATTGTGAGAAGGAATCAATCAACCTTTCGTTGAAGAACTTGATGATGTACCCGTGGATCGAAGAAAGATTAAAACAGGAGATGATTTCCGTTCATGGGGGATACTATGATTTCTTGACTTGTACATTTGAGAAGTGGACTCTTGATTACAAGAACACCAGTAGAGTTGATAATGATGATGATCATGGATGCCTTATCAAAGATCAATCAATTTGGTGTTGAGTTCTCCAGATCATCATCCTCTGAAAACTCTGCTGAAATCATTACATTAACACAATGCTCTTGTGAATAATGTATTGTATATGAATTTATCTAGAGATTTTTTTTTTATGTACGTTGATCATTTTTCAGTCTCATAAATGATTAATGATCTGTTCCTCACAAATGTAAATTTGGCCTAATGTTTATGTCAGAGTGCATTATCACATTTTATAACATATCGGATTAGAGATGATTGTCTATCGTAGCCTTAATGCAATGACCATGTCTATCGCGATCTCATTTTTCTCCATTACACTCATGGAAAAAGTAATGTACAGTGTGAGAAAATGAAGAATGCAATAGATATGATCATTCCTAACATGATAAGTTATAAAATGCAATAGTGTGCTCTGATGTAAGCATAAGGCTAAATTTCATACATTTATAGAGGACAGATCATTAGTCATAAAGGCGTTTGTGAAAAATGATCCGAAAAAAAAAAATTGTTATTAAATCCATCTCAACTTATGTCAGAAGGAGATTGGACCCACTGCTACTGTAGCTCCAACCCACTAAAGAGGAGATTTGGTTAAGGAGTTTCTACACATATAACCTTAATTATAATCCAATCTTACACTTATGTTTGAAA 1966 36.83 MAAIRPTLIQKNPFLFSSFSVGRSSLSVKEEMDETHLEVPSNLIHELEVKKLAKVKDEHKLFDEMRRRFLSFKKHKYLENLEHFQALAELQAPKVIEMMSRTLRFLLDLFCLLVLLSCFDYLPSLKFIVLKLPWILDTSSQVEQFMVISCVDSRVCPSNILGFQPGEAFTVRNVANIVPPWENGPTETNAALEFAVNTLEVENILVIGHSSCAGIQSLMSMEDNALDSSLFYHGSFVHKWVVNAKAAKLRAKAAGAHLSFDQQCKHCEKESINLSLKNLMMYPWIEERLKQEMISVHGGYYDFLTCTFEKWTLDYKNTSRVDNDDDHGCLIKDQSIWC 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23687908 23691430 - XM_039029586.1 Bhi04g00925 32534

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00925 338 Gene3D Carbonic anhydrase 52 322 IPR036874 GO:0004089|GO:0008270
Bhi04g00925 338 PANTHER CARBONIC ANHYDRASE 37 96 - -
Bhi04g00925 338 PANTHER CARBONIC ANHYDRASE 140 338 - -
Bhi04g00925 338 SUPERFAMILY beta-carbonic anhydrase, cab 141 320 IPR036874 GO:0004089|GO:0008270
Bhi04g00925 338 SMART Pro_CA_2 138 312 IPR001765 GO:0004089|GO:0008270
Bhi04g00925 338 Pfam Carbonic anhydrase 146 304 IPR001765 GO:0004089|GO:0008270
Bhi04g00925 338 PANTHER CARBONIC ANHYDRASE 140 338 IPR001765 GO:0004089|GO:0008270
Bhi04g00925 338 PANTHER CARBONIC ANHYDRASE 37 96 IPR001765 GO:0004089|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00925 K01673 cynT, can; carbonic anhydrase [EC:4.2.1.1] - csv:101212995 465.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00925 Bhi-Chr4:23687908 Bhi04g00928 Bhi-Chr4:23687908 0 dispersed
Bhi04g00925 Bhi-Chr4:23687908 Bhi04g00926 Bhi-Chr4:23687908 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g503 . . Bda01g00913 . . . . . . Cmo12g00150 . . . Car12g00178 . . Cpe07g00166 Bhi04g00925 . . . . . . . . . . . . . . . . . . . . . . Blo18g00104 . . Bpe02g01152 Bpe05g00432 Bma01g00979 . . . . Cma12g00197 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001553 2 9 2 1 2 2 2 2 2 1 2 2 2 2 2 2 2 4 3 2 2 2 3 2 1 2 3 4 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00925 Bhi_Chr04 FPKM 12.002408 14.126137 11.367332 11.164131 8.082592 7.926625 6.081036 111.286964 116.409248 113.050453