Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00935 GTCATATTCTAATCCACATTTCTCTCTCTCTAAAACCTTCCTTCTTATCCCTCTGCTCGTCATTTCTTGCCAAAACCTACCACACTCTTCTTTTTAGTCTCCCAATCAAAATACCAATTTTGGTCGGAATTTCCCTCTTTTTCTTTTTTCTTCTTTTTTATTTTACTTAACTTACTTTTTCTTCGTTTCGTCTCTATTTGATCTTATTCTACGTCACTTATTTTTTTCAATTTTAATTATTTTTTTTTCTCCTTTTCCACTCTCAGATCTGAACTCAGATTCTTTCTCTAGGGTTTTTTCTTCTCCTCTCTTTAATTTCAAGGAAGATCAATTTGGAAGAAGAAATTAAAATTTTATTTTTGTATTATTTTGGATTGGAAGGTTATAAGATACCAATTTTTTTGTTATAAATAATAATAATAAAAAAGTGTGGTTGTAGGAAGAAACATAACATGGCTAGGGAGAAAATCAAGATAAAGAAGATTGATAATCTAACGGCGAGGCAGGTGACATTCTCTAAGCGAAGGAGAGGGCTTATCAAGAAGGCCGAGGAGCTGTCGGTGCTCTGCGACGCCGAGGTGGCGCTGCTCATCTTCTCCGCTACCGGCAAGTTTTTCGAGTATTCGAGCTCCAGCGTTAAGGAAGTTATTGCTAGATATAATTTGCACTCTACTAACCTTGGAAAGTTGGAATATCCATCCCTCGGGCTGCAGCTTGAAAATAGCAATCACGTCCGATTGAACAAGGAAGTTGAAGATATGACCCAACAACTTAGGCAGATGAGGGGAGAGGATCTTCAAGGATTGAATTTAGAAGATCTGAAGCAATTGGAAAGAATGCTTGAAGTTAGTCTCACACGAGTTCTTCACACCAAGGAAGAGAAGATTATGAGTGAAATTAATGCGCTTGAGTTTAAGGGAGCGAGGCTGATGGAAGAAAACAAGATGCTTAAACAGCAGATGTTAAGGTTGTCGAATGATAGAACGCCAGTGCTCGTGGATTCCGACGTTCATGTTGCGGCGGAAGAAGGGGTTTCGTCGGAATCCGCCGCCAATGTCTGCAGCTGCAACAGCGGTCCTCCTGCCGACGACGACAGCTCCGACACCTCTCTCAAATTAGGGCCTCCTTGCCCGAACTGAGGCAGAAGTAGTCCAAGAGATGAGGAAGAGACAGGGAAATTAGATGCAACAAACAAAAGTGAAGTGTGTGAATTATATAAAACTTTATTAATACAATCCATGAGAGTAAAGAACACTAATAAACGACATATTCGAACTCTAATCTTTTGATCAAGAGTTTAAATTTTATGTGAGTTTAATTATGCTTATGTTGGCATAAGCGTTACTAATTAATTAATTACAGTTTCTTTTCTATAAA 1377 38.49 MAREKIKIKKIDNLTARQVTFSKRRRGLIKKAEELSVLCDAEVALLIFSATGKFFEYSSSSVKEVIARYNLHSTNLGKLEYPSLGLQLENSNHVRLNKEVEDMTQQLRQMRGEDLQGLNLEDLKQLERMLEVSLTRVLHTKEEKIMSEINALEFKGARLMEENKMLKQQMLRLSNDRTPVLVDSDVHVAAEEGVSSESAANVCSCNSGPPADDDSSDTSLKLGPPCPN 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23809905 23817919 + XM_039030254.1 Bhi04g00935 32544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00935 228 MobiDBLite consensus disorder prediction 197 228 - -
Bhi04g00935 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bhi04g00935 228 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Bhi04g00935 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bhi04g00935 228 Pfam K-box region 91 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi04g00935 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bhi04g00935 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi04g00935 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi04g00935 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bhi04g00935 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bhi04g00935 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 222 - -
Bhi04g00935 228 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi04g00935 228 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 222 - -
Bhi04g00935 228 Coils Coil 86 113 - -
Bhi04g00935 228 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Bhi04g00935 228 MobiDBLite consensus disorder prediction 197 214 - -
Bhi04g00935 228 Coils Coil 149 169 - -
Bhi04g00935 228 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00932 Bhi-Chr4:23809899 Bhi04g00935 Bhi-Chr4:23809905 1.23E-169 dispersed
Bhi04g00933 Bhi-Chr4:23809905 Bhi04g00935 Bhi-Chr4:23809905 1.23E-169 dispersed
Bhi04g00934 Bhi-Chr4:23809905 Bhi04g00935 Bhi-Chr4:23809905 7.74E-93 tandem
Bhi04g00935 Bhi-Chr4:23809905 Bhi04g00936 Bhi-Chr4:23809905 2.54E-147 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
923 PF01486 K-box 7.80E-16 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00935 - - csv:101213234 385.956