Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00936 GTCATATTCTAATCCACATTTCTCTCTCTCTAAAACCTTCCTTCTTATCCCTCTGCTCGTCATTTCTTGCCAAAACCTACCACACTCTTCTTTTTAGTCTCCCAATCAAAATACCAATTTTGGTCGGAATTTCCCTCTTTTTCTTTTTTCTTCTTTTTTATTTTACTTAACTTACTTTTTCTTCGTTTCGTCTCTATTTGATCTTATTCTACGTCACTTATTTTTTTCAATTTTAATTATTTTTTTTTCTCCTTTTCCACTCTCAGATCTGAACTCAGATTCTTTCTCTAGGGTTTTTTCTTCTCCTCTCTTTAATTTCAAGGAAGATCAATTTGGAAGAAGAAATTAAAATTTTATTTTTGTATTATTTTGGATTGGAAGGTTATAAGATACCAATTTTTTTGTTATAAATAATAATAATAAAAAAGTGTGGTTGTAGGAAGAAACATAACATGGCTAGGGAGAAAATCAAGATAAAGAAGATTGATAATCTAACGGCGAGGCAGGTGACATTCTCTAAGCGAAGGAGAGGGCTTATCAAGAAGGCCGAGGAGCTGTCGGTGCTCTGCGACGCCGAGGTGGCGCTGCTCATCTTCTCCGCTACCGGCAAGTTTTTCGAGTATTCGAGCTCCAGCGTTAAGGAAGTTATTGCTAGATATAATTTGCACTCTACTAACCTTGGAAAGTTGGAATATCCATCCCTCGGGCTGCAGATGAGGGGAGAGGATCTTCAAGGATTGAATTTAGAAGATCTGAAGCAATTGGAAAGAATGCTTGAAGTTAGTCTCACACGAGTTCTTCACACCAAGGAAGAGAAGATTATGAGTGAAATTAATGCGCTTGAGTTTAAGGGAGCGAGGCTGATGGAAGAAAACAAGATGCTTAAACAGCAGATGTTAAGGTTGTCGAATGATAGAACGCCAGTGCTCGTGGATTCCGACGTTCATGTTGCGGCGGAAGAAGGGGTTTCGTCGGAATCCGCCGCCAATGTCTGCAGCTGCAACAGCGGTCCTCCTGCCGACGACGACAGCTCCGACACCTCTCTCAAATTAGGGCCTCCTTGCCCGAACTGAGGCAGAAGTAGTCCAAGAGATGAGGAAGAGACAGGGAAATTAGATGCAACAAACAAAAGTGAAGTGTGTGAATTATATAAAACTTTATTAATACAATCCATGAGAGTAAAGAACACTAATAAACGACATATTCGAACTCTAATCTTTTGATCAAGAGTTTAAATTTTATGTGAGTTTAATTATGCTTATGTTGGCATAAGCGTTACTAATTAATTAATTACAGTTTCTTTTCTATAAA 1311 38.37 MAREKIKIKKIDNLTARQVTFSKRRRGLIKKAEELSVLCDAEVALLIFSATGKFFEYSSSSVKEVIARYNLHSTNLGKLEYPSLGLQMRGEDLQGLNLEDLKQLERMLEVSLTRVLHTKEEKIMSEINALEFKGARLMEENKMLKQQMLRLSNDRTPVLVDSDVHVAAEEGVSSESAANVCSCNSGPPADDDSSDTSLKLGPPCPN 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23809905 23817919 + XM_039030257.1 Bhi04g00936 32545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00936 206 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bhi04g00936 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bhi04g00936 206 MobiDBLite consensus disorder prediction 171 206 - -
Bhi04g00936 206 ProSiteProfiles K-box domain profile. 55 154 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi04g00936 206 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bhi04g00936 206 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bhi04g00936 206 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi04g00936 206 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi04g00936 206 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bhi04g00936 206 Coils Coil 127 147 - -
Bhi04g00936 206 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Bhi04g00936 206 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Bhi04g00936 206 MobiDBLite consensus disorder prediction 175 192 - -
Bhi04g00936 206 Pfam K-box region 87 148 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi04g00936 206 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Bhi04g00936 206 PANTHER SERUM RESPONSE FACTOR HOMOLOG 87 200 - -
Bhi04g00936 206 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 83 - -
Bhi04g00936 206 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 83 - -
Bhi04g00936 206 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 87 200 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00934 Bhi-Chr4:23809905 Bhi04g00936 Bhi-Chr4:23809905 3.32E-121 dispersed
Bhi04g00935 Bhi-Chr4:23809905 Bhi04g00936 Bhi-Chr4:23809905 2.54E-147 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
924 PF01486 K-box 3.40E-12 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00936 - - csv:101213234 337.035