Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00939 ACACTGTAAAAATTTATAATAATTTCTATCCAACGCCGCTGCATTTTGATTGGTCCACGCTGGCATTTGAACCCTTACGCCCCTACGTCGACCGGGAATTTCTTCCATTTGGACCTTCTTCTTGCGTCTACGCTGCCGGTGCTAGGTTTCTATTTAGAGCAAAGTCGATAACCGAGATTTCCCTTACTTTTCTCTTCTTTTGATTCTCGAGGTACTAGACATTCTATTGTAAATTGCTGAGCTCTGAACCAAGAAATCTCACTACATTATTGAGCCCCTTTTACGGGGTTCAGTGTACAAACTAACTTAATCTGCATTGGGATACTATCCTTGCACATCACTGTTTTCAGCTCATTCAACGATGGTTCATCCTGGTTCAACCCAATTTTCACATAAATTGGGGATTCAAAGTGTTCATGGATGCAACAAGCTACATATTAGTGTCAAGGGAAAGACTCGTCTACATCTTGTTACTATAGTTCCTACATCACACGGTCTGAGGCACGATCCTGGAAGTCTTCAGCTCTTACAGAGTGTAAGACGCCCGATGTATCCTGTGTCTTCCAGAGCAAATGTTTTTGTGTGTCGATCTGTTCTGGAATCAGGTGGTGGAGCTGGGACTGCTGTTCTAAAATCTGCAGCTGTGGTTTTGACAAGGTCTTATGATGCTTTACGTGGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGATTCTATTTCTTCATGAGCCAGATGGCAGTTGGAAGAAAAGTAGTACATACTATGTTACGACTTCTTATGTTCAGCCTTTACTGCTTTGGACTGGAGCTACGCTGATTTGCAGGGCATTGGATCCAGTAGTTTTACCTTCAGTAGCCAGTCAGGCTGTCAAACAACGACTTCTGAATTTTGTTAGATCTTTATCTACTGTTCTCGCATTTGCCTATTGTATATCCAGCTTGATTCAACAAGTACAAAAATTTGCTTCTGAATCAAATGACTCGAGTGATGCAAGAAATATGGGCTTTGATTTTGCCGGGAAAGCTGTTTACACTGCAGTCTGGATTGCTGCTCTTTCATTGTTCATGGAGTTGCTCGGCTTTTCAACCCAGAAGTGGCTCACAGCTGGGGGTCTTGGAACTGTATTGCTTACCCTTGCTGGTCGTGAGATATTTACCAACTTCCTTTCAAGTGTCATGATTCATGCAACACGACCATTTGTGGTAAATGAATGGATTCAAACAAAGATCGATGGATACGAAGTATCAGGAACGGTTGAGCACGTTGGTTGGTGGTCGCCAACCATCATCCGAGGCGATGATCGTGAAGCGGTCCATATTCCAAATCACAAATTTACTGTTAGTATTGTGAGGAATCTTACCCAGAAGACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTGGATGTTAATAAGATTAATTATATTGTAGCTGATATGCGCAAAGTTTTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACACCGCAGAATTTTTTTGGATAATGTCAATCCTGAAAACCAGGCTCTTATGATTATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAATACCTGTGTGTCAAGGAGGCAATTCTCTTGGATCTCCTCAGGGTTATCAGCCATCATAGGGCCCGGCTCGCCACACCTATTCGCACTGTTCAGAAAATATATGGTGAGGCTGACTTGGAGAATGTACCATTTTCCGACACCATGTATTCTCGTTCGGGAGCTACTAACCGTCATCTGCTTCTTATCGAGCCATCTTATAAAGTCAATGGTGATGATAAAACCAAAGTCTCTAGTCGTTCCACTCGTCCATCAAACGAAGAAAAGGAAGCCAAACAAGAGGCAGTCTCGACGTCAGGGACAAAAGCCCCCGACACAACTGGATCAACATCAAATCTTGATATGAAAACAGACGATAAAAAATCGATTTCTCCATCTGGTACTACACCTAAGCCTTCAACAGGATCGATATCCAACACACAGACACCAAATCTATCAACCAGCATTTCAGAACAAAGCAGCGCAGAAAAGCCAATAACAAGCAATGAGATAAAAGGACTGAATTCCAAGGACAATATGACACGAGGGACTCCGCCCAAAAGATCACCCTCAGCTTCTGGTCCCATCAGCGAGAAAGCTGATATTCCTTCCTCAAGCTCACAGAATAAGCTAGACAGCGAGAAGCCCTCTGCATCGCCATCAGTAGCAAGGCCACCATTGGAGGAGAATATTGTTCTGGGAGTTGCTTTGGAAGGCTCCAAAAGAACTCTTCCGATTGATGAAGATTTGGATTCAAAAGAAGTTTCTACGCAGAGGAATGGGTGTGAGTTTCCTACCAACAGCAAGGATATGAAAGATGGCCAAATGCCTGCAGTTCCAGGTGCGACAAAAAATGATTGATGAGTAGGCATCTCGAGGGTTGCTTTCTCCCAATTATTACCCCGATTTTTGAAGCGATGCGAAAATGAAATGCAGAGCTGCATTTTTAAGCAAGCATTTTGCAGGCTCGCCAGTGTAAAAAATTCATATCTTGTTCCAAAGGCAATGTTGGCTACGCTAACTTTCCCCCCAGAAAAGAAAATAGGAAAAAAAAAAAAGGATAATTACGTTATCATTCTTATTGTTAAATGATTTCTCAGGATCAGTCTGTCATTAGTGAGTTGAATATACATTAGAACTGGGATAGATTTAGCAAATTGAGCATAATTTAACTGGTTTAGACATGTACTTTGAAGAAGGTTGACAGATGAATAACGTGACACCTGTAAAGGTCACATGGATGTAAGGGTCAAAGTAAAACATTACATTTTTCTTGGGCTAA 2897 42.15 MVHPGSTQFSHKLGIQSVHGCNKLHISVKGKTRLHLVTIVPTSHGLRHDPGSLQLLQSVRRPMYPVSSRANVFVCRSVLESGGGAGTAVLKSAAVVLTRSYDALRGSPLLLKLIPAACVIAFAAWGVGPLMRLGRILFLHEPDGSWKKSSTYYVTTSYVQPLLLWTGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCISSLIQQVQKFASESNDSSDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNVNPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFSDTMYSRSGATNRHLLLIEPSYKVNGDDKTKVSSRSTRPSNEEKEAKQEAVSTSGTKAPDTTGSTSNLDMKTDDKKSISPSGTTPKPSTGSISNTQTPNLSTSISEQSSAEKPITSNEIKGLNSKDNMTRGTPPKRSPSASGPISEKADIPSSSSQNKLDSEKPSASPSVARPPLEENIVLGVALEGSKRTLPIDEDLDSKEVSTQRNGCEFPTNSKDMKDGQMPAVPGATKND 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23892852 23899848 - XM_039030869.1 Bhi04g00939 32548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00939 704 MobiDBLite consensus disorder prediction 660 674 - -
Bhi04g00939 704 MobiDBLite consensus disorder prediction 616 634 - -
Bhi04g00939 704 Gene3D - 194 296 - -
Bhi04g00939 704 MobiDBLite consensus disorder prediction 496 704 - -
Bhi04g00939 704 Pfam Mechanosensitive ion channel 239 446 IPR006685 GO:0016020|GO:0055085
Bhi04g00939 704 MobiDBLite consensus disorder prediction 521 538 - -
Bhi04g00939 704 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
Bhi04g00939 704 Gene3D - 298 353 IPR023408 -
Bhi04g00939 704 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 696 - -
Bhi04g00939 704 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 696 IPR045042 -
Bhi04g00939 704 MobiDBLite consensus disorder prediction 547 609 - -
Bhi04g00939 704 MobiDBLite consensus disorder prediction 496 520 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00939 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101213477 1268.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00939 Bhi-Chr4:23892852 Bhi11g00900 Bhi-Chr11:27799182 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00939 . 10 693 Mechanosensitive Ion Channel Family AT5G10490 56.5 2.6e-196 682.9
Bhi11g00900 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00903 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00902 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00901 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00904 . 1 604 Mechanosensitive Ion Channel Family AT5G10490 60.8 1.7e-187 653.7
Bhi04g00939 . 10 673 Mechanosensitive Ion Channel Family AT1G58200 57.6 4.8e-198 688.7
Bhi11g00900 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00903 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00902 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00901 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00904 . 1 570 Mechanosensitive Ion Channel Family AT1G58200 56.8 4.5e-164 575.9
Bhi10g01195 . 43 920 Mechanosensitive Ion Channel Family AT1G53470 55.9 8.2e-259 891.0
Bhi05g01668 . 91 959 Mechanosensitive Ion Channel Family AT1G53470 50.9 4.0e-237 818.9
Bhi10g01195 . 43 918 Mechanosensitive Ion Channel Family AT3G14810 53.6 1.4e-247 853.6
Bhi10g01195 . 43 920 Mechanosensitive Ion Channel Family AT1G78610 59.6 3.1e-279 958.7
Bhi05g01668 . 59 959 Mechanosensitive Ion Channel Family AT1G78610 55.3 1.1e-268 923.7
Bhi05g01669 . 59 726 Mechanosensitive Ion Channel Family AT1G78610 51.7 2.1e-171 600.5
Bhi10g01195 . 216 920 Mechanosensitive Ion Channel Family AT2G17000 61.4 5.5e-236 815.1
Bhi05g01668 . 273 957 Mechanosensitive Ion Channel Family AT2G17000 57.9 3.2e-220 762.7
Bhi05g01669 . 273 725 Mechanosensitive Ion Channel Family AT2G17000 59.7 2.4e-143 507.3
Bhi09g03087 . 65 720 Mechanosensitive Ion Channel Family AT5G19520 50.6 3.6e-175 612.8
Bhi09g03089 . 65 720 Mechanosensitive Ion Channel Family AT5G19520 50.6 3.6e-175 612.8
Bhi09g03088 . 65 718 Mechanosensitive Ion Channel Family AT5G19520 50.4 3.4e-173 606.3
Bhi02g01835 . 58 750 Mechanosensitive Ion Channel Family AT5G12080 52.5 2.0e-194 676.8
Bhi09g03087 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 54.5 1.6e-186 650.6
Bhi09g03089 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 54.5 1.6e-186 650.6
Bhi09g03088 . 64 718 Mechanosensitive Ion Channel Family AT5G12080 54.2 5.5e-184 642.1
Bhi09g03090 . 79 725 Mechanosensitive Ion Channel Family AT5G12080 53.4 8.8e-182 634.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00939 Bhi_Chr04 FPKM 0.377934 0.704562 0.19126 4.221993 0.0 0.0 0.0 23.800787 26.992567 14.282941