Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00949 AACCGGTCCATTTCACCCGCTCGTGGAAATGACTTCCACCTTCTTCAACCCTGCGCCGCCATGCAACGCCGCTGTTGTTTCTTCTTCGTTTCTCAGATTCGGGTTCATACCGAAATTTCCCGCCATCATACCTTTATCGTCTCTTTCGACGGTCCCGTTTCGCGCCAAAACTACCGTTAACTGTTCTCTCCCCGCCCATGGCGATGCTTCTGTTCAGACTGATTTCTGCTTTCTGAAGAAGAGGGAATTTGTCTTTTCTGCCGCGCTGCCGTTTCTTCTTATTTTGGCTGAATCCGTGGAAGGTTTTAAAGCTGAGGCGGCAGAAAGATTAGATAAAAGGGAAGTTGAACGGATAAGAGAAGAAGTAAGAAAGGTGGTAACCAAAGGCAGGGCACCTGGTCTGCTTCGTCTGGTATTTCACGATGCTGGAACTTTTGAAATGAATGATACTTCAGGTGGTATGAACGGATCTATCATTCACGAACTTGATAGACCTGAAAACAGAGGTCTCAAGAAATCAGTTAAGATTCTTGAAGAAGCAAAGAGTACACTGGATTTAATAAGACCAGTATCTTGGGCAGACGTGATAGCAGTGGCTGGCGCTGAAGCAGTTTCAGTATGTGGAGGTCCAAGTATTTCTGTTGAGTTGGGTAGATTGGACTCTGAGAAGCCAGATCCAGAAGGTAAACTTCCTGAGGAATCTCTGGATGCTGTTGGATTAAAGCAAATCTTCAGCAGAAAAGGATTTGCGACAAGAGAACTAGTTGCCCTATCTGGAGCCCATACTATTGGTGGCAAAGGTTTCGGAAGCCCAGTTGTATTTGATAATGCATATTTCAAAATCCTTTTGGAGAAGCCATGGTCATCTAACGGTGGTATGTCCAGTATGATAGGGCTGCCTTCTGATCATGCTCTTGCTGACGATGATGAATGCTTGAGCATTTCAAGAATGAGTTCAATTTGTTGGACTAGAGTAGAAAAGTTCATATGAGATTAACTTTCAGACCAGGCGACCACCAAGATTTAAGAGAGAAAATTAGCTGATTTCGCTCTTTTATCTTTTTAACTGAAATGAATTACTTCGAATTCCTAGATGGATCAAAGAGTATGCCAACGATCAGAATGTGTTCTTCGAAGATTTCCAGAATGCTTATATCAAGCTAGTAAATTCTGGTGCAAAGTGGAAAAGCTAGCAAACAACTGTACGACATGTATACACTCTAAAGGCAAGCTTTAGCTACTACATATTGGCGTGGAGATGGGTTGACTCATATTACTACACTTTTCGGCCTCCCAAAACCATTGCTTACTATGATCCGTTGTTGGTAGGTTAAAAGAAACTGCGAGACAAAGCAAAAGTTGCAATGAAGATGAAAGCTTGAAATGTATTGTGCTTTCATCACCGACCAATTAGTTCGCTCTCTGAAGCCTTATCTTTTGTTGGTCTAAATTTGGCTTGAAGCACTTGTATAGGCACTTGTATCTTATCAGGAAAACAAGAACATAATTACTCGCAATTCATCAGAGTTCCAAATTCAGAATAAAGGTTGTATATTTCATGCATATGCATATCAATGTTGCCTTGTCAAAACATAATACGTTTATGGGATGAGCTTGGGAGATTCCACA 1629 41.8 MTSTFFNPAPPCNAAVVSSSFLRFGFIPKFPAIIPLSSLSTVPFRAKTTVNCSLPAHGDASVQTDFCFLKKREFVFSAALPFLLILAESVEGFKAEAAERLDKREVERIREEVRKVVTKGRAPGLLRLVFHDAGTFEMNDTSGGMNGSIIHELDRPENRGLKKSVKILEEAKSTLDLIRPVSWADVIAVAGAEAVSVCGGPSISVELGRLDSEKPDPEGKLPEESLDAVGLKQIFSRKGFATRELVALSGAHTIGGKGFGSPVVFDNAYFKILLEKPWSSNGGMSSMIGLPSDHALADDDECLSISRMSSICWTRVEKFI 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24108316 24112408 + XM_039029525.1 Bhi04g00949 32558

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00949 320 CDD plant_peroxidase_like 107 307 - -
Bhi04g00949 320 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 46 304 IPR044831 GO:0004601|GO:0034599
Bhi04g00949 320 ProSiteProfiles Plant heme peroxidase family profile. 122 255 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bhi04g00949 320 Pfam Peroxidase 110 306 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bhi04g00949 320 ProSitePatterns Peroxidases proximal heme-ligand signature. 244 254 IPR019793 -
Bhi04g00949 320 Gene3D - 87 226 - -
Bhi04g00949 320 SUPERFAMILY Heme-dependent peroxidases 114 306 IPR010255 GO:0004601|GO:0006979|GO:0020037
Bhi04g00949 320 PRINTS Haem peroxidase superfamily signature 122 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bhi04g00949 320 PRINTS Haem peroxidase superfamily signature 181 198 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bhi04g00949 320 PRINTS Haem peroxidase superfamily signature 199 211 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bhi04g00949 320 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bhi04g00949 320 PRINTS Plant ascorbate peroxidase signature 102 122 IPR002207 GO:0004601|GO:0006979|GO:0020037
Bhi04g00949 320 PRINTS Plant ascorbate peroxidase signature 140 150 IPR002207 GO:0004601|GO:0006979|GO:0020037
Bhi04g00949 320 PRINTS Plant ascorbate peroxidase signature 180 198 IPR002207 GO:0004601|GO:0006979|GO:0020037
Bhi04g00949 320 PRINTS Plant ascorbate peroxidase signature 199 211 IPR002207 GO:0004601|GO:0006979|GO:0020037
Bhi04g00949 320 PRINTS Plant ascorbate peroxidase signature 220 237 IPR002207 GO:0004601|GO:0006979|GO:0020037
Bhi04g00949 320 PRINTS Plant ascorbate peroxidase signature 238 259 IPR002207 GO:0004601|GO:0006979|GO:0020037
Bhi04g00949 320 PANTHER L-ASCORBATE PEROXIDASE 6-RELATED 46 304 - -
Bhi04g00949 320 Gene3D Peroxidase, domain 2 227 311 - -
Bhi04g00949 320 ProSitePatterns Peroxidases active site signature. 122 133 IPR019794 GO:0004601
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00949 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - csv:101216396 541.576
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00949 Bhi-Chr4:24108316 Bhi04g00951 Bhi-Chr4:24108316 0 dispersed
Bhi09g02454 Bhi-Chr9:66769581 Bhi04g00949 Bhi-Chr4:24108316 2.04E-17 dispersed
Bhi09g02455 Bhi-Chr9:66769581 Bhi04g00949 Bhi-Chr4:24108316 9.55E-17 dispersed
Bhi04g00948 Bhi-Chr4:24108316 Bhi04g00949 Bhi-Chr4:24108316 0 tandem
Bhi04g00949 Bhi-Chr4:24108316 Bhi04g00950 Bhi-Chr4:24108316 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g484 . . . . . . . . . Cmo12g00288 . . . Car12g00320 . Cpe07g00297 . Bhi04g00949 Tan02g2724 . . Hepe10g0250 . . . . . . . . . . . Cone17ag1019 . . . . Cme03g01615 Blo17g00021 . . Bda13g01263 Bpe14g00580 . . Bma02g00025 . . . . Cma12g00339 . . . . . . . . . . . Cla08g01335 Cam08g1797 Cec08g1376 Cco08g1504 Clacu08g1491 . Cre08g1278 Lsi08g01206 . Chy03g01119 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007203 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00949 Bhi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0