Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00955 ATTTCGACCCTTCTAAAATCTGCCCGATATTCGACTCTGGACCGTCTGGACATTATTCGAAGGCTTCTCTCTTTCGCGGTCGGGGGAGTTTTACATGTTTTTCAACGAACTTCAGGCCTCTCCCCACCAGGATTTAGTGCTCTTCTTCGGATAATTTTGCTTGGAAACGCGTAAATGCATTATCCAGGGAACATTTGGCTTGTGCTCTAACAGATTACAACACGACTGAGTGACAAATTCAAGAGACGACAAGCGATCACTCGGAGTAGCAACGATGGACAAGCATTAATTTTCAATCTTCTCTTCTCTGTCTTTCTGGTGATGGTGTTTTTTCCCTTCCTTTTCTGGTTCTGGGTCTTGTAGATCACATTAAAAGGAGGATTTATTGGTCATTTTATGGTTCTTCCCTTAGCTTGCAGGGTAAACAATAGAAATAGAAGCATTAGCTTTTCATGTGTAGTTTAAGAGTATTTTACTTTGGATTGGAATCTTTAATATTTCTTTTTGCTTCTTCATCAAGCAAGCTTGAGAGTTAGTGAACAGGAACTTGTTCAGGCTTTTTACCCTTCATTCCTTTCTTCAAGTTCTAGGAAGTTGTTTACGCAGGGGAAACTATGTATTCTAGGTGTTGTCTCCTCGGCCGCTTAGAGGGTTGCTCTAGCAAGAAACCATGTTGTTCATTCTTACAGTTTTCTGGAGAATATCTGCGCGCACTTATTCTTTTGATGGTGGATAATATCAAGCTTCTTTTCCATAGAAGAAGCTGCCATGGATGCTGCACTGCATCTGCACTAAGTAATGCAATGGATGGGCCGTCTAAAGGTCTGAGAGTTAAAGACCAAGAAGCAAAGAAACAATGCTTACCAGAAAATATCCCGAGCTCTAGCACATGTGAAATGGACAACAGTACAGTTTGGTCCCAGAGAAGCATGGCATCAGCTCACTCACATGATTCTCACAGCAATATTGGGAGCAGTACAGACTTTGTAAATTCTGGACTACTTCTTTGGAATGAAACCAGGAAGCAATGGGTTGGAAATAAAATGTCCGAGAGGCAAAAGCAAGTTCAAGAACCCAAAATAAGCTGGGATGCTACTTATGACAGCTTATTAATAACAAACAAGCCGTTCCCCGAGCCTGTACCTCTTACTGAGATGATAGATTTTCTTGTTGATGTCTGGGAGCAGGATGGTCTATATGACTGAGCCTGCAGTTCAAGGGAGTCTTCATATTGTTTAAACTTATGCAGCTCGAATTTTTTTCGCTGCTGAATTTATATCTTCGATTACGGGAAATCGTTCAATGCTTATAGTATACAAATACTAGTGTTTATATGTTGAATTCAAGCTACCCATTTTGGATATTTTTCAAGAATGGGATCATTTTGAAAATATAGGCTTTTATGTTGAACTTCTGCTAGCTTTGAGCAGTTTGGGGTTCGCATCTTTACTGGCTTTGGCGTAATGAACACAGTTTGGGCTCTAAGAATTCTTAAGCCCATAAAGATAAGTTGTGGCCACGATCGTATTAAAGATTCCCAGGGTATAAAGTGTAATAAATACCATTTTAATGCTACAACTGCGTAATTGGTGGGGCA 1597 40.26 MYSRCCLLGRLEGCSSKKPCCSFLQFSGEYLRALILLMVDNIKLLFHRRSCHGCCTASALSNAMDGPSKGLRVKDQEAKKQCLPENIPSSSTCEMDNSTVWSQRSMASAHSHDSHSNIGSSTDFVNSGLLLWNETRKQWVGNKMSERQKQVQEPKISWDATYDSLLITNKPFPEPVPLTEMIDFLVDVWEQDGLYD 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24171984 24175691 - XM_039029415.1 Bhi04g00955 32564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00955 196 PANTHER DUF4050 FAMILY PROTEIN 44 196 - -
Bhi04g00955 196 Pfam Protein of unknown function (DUF4050) 91 154 IPR025124 -
Bhi04g00955 196 Pfam Protein of unknown function (DUF4050) 155 196 IPR025124 -
Bhi04g00955 196 PANTHER OS07G0479600 PROTEIN 44 196 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00955 - - - csv:101216869 357.066
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00991 Bhi-Chr2:22127946 Bhi04g00955 Bhi-Chr4:24171984 2.44E-52 dispersed
Bhi04g00955 Bhi-Chr4:24171984 Bhi04g00958 Bhi-Chr4:24171984 2.05E-148 dispersed
Bhi11g02062 Bhi-Chr11:58798411 Bhi04g00955 Bhi-Chr4:24171984 2.91E-24 dispersed
Bhi11g02063 Bhi-Chr11:58798778 Bhi04g00955 Bhi-Chr4:24171984 2.91E-24 dispersed
Bhi04g00954 Bhi-Chr4:24171984 Bhi04g00955 Bhi-Chr4:24171984 3.35E-98 tandem
Bhi04g00955 Bhi-Chr4:24171984 Bhi04g00956 Bhi-Chr4:24171984 4.94E-98 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g481 . . . . . . . . . Cmo12g00286 . . . Car12g00318 . Cpe07g00295 . Bhi04g00955 . . . Hepe10g0252 . . . . . . . . . . . Cone17ag1022 . . . . . . . . . . . . . . . . . Cma12g00337 . . . . . . . . . . . Cla08g01333 Cam08g1795 Cec08g1374 . Clacu08g1489 . . . . Chy03g01121 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012949 0 5 0 0 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 4 1 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00955 Bhi_Chr04 FPKM 29.515968 30.555847 50.846703 52.382763 40.725693 42.024525 44.034878 79.847198 80.426163 85.636963