Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00972 CACAACTTTTGGTTGATAATATGATGAACCATGTTGGCGACTTTTGAAAGTTCGCGTTGTTCCCTTGAGAACAGCCGAAACTATGTAACACCGAAACAGAGGAATTGGTTCGAATCTACTGAATGAAGCTTTGCAGAAGAATTCGGATTTGCTTACTTGACTAAATGCAATCCCAATTCACAAAAACCAAGCTATTACGTGCAATCAACAATGTTGTAGCTTCTACAACTAACCCTCGTGCAGCGGAGCAGAACTGTTTAGCCCTGCTTCAGGCCTGTAACGCGTTGCCGAAGCTCACCCAAATCCATACCCACATTCTCAAATTGGGCCTCCACAACAACCCGCTCGTTCTCACCAAATTCGCCTCCATTTCTTCTCTTATTCATGCTACTGATTATGCTGCCTCTTTCTTGTTCTCTGCTGAAGCTGATACTCGGCTTTACGATGCGTTTCTTTTCAATACCCTCATCAGAGCCTATGCCCAAACTGGTCACTCGAAGGATAAAGCCTTGTCTTTGTATAGTATAATGCTTCACGATGGGATTTTGCCTAATAAGTTCACTTACCCATTTGTCTTGAAGGCTTGTGCTGGTCTTGAGGTTTTGAATTTGGGTCAATCGGTTCATGGGTCGGTGGTGAAGTTCGGGTTTGATCGTGATATTCATGTTCAGAACACTATGATTCATATGTACTCCTGTTGCGCCGGTGGGATCAATTCTGCCCGGAAGGTGTTTGATGAGATGCCCAAGTCAGATTCTGTGACTTGGAGTGCGATGATTGGTGGGTATGCTCGAGTAGGGCGCTCTACTGAAGCCGTGGCCTTATTTAGGGAGATGCAAATGGCCGAGGTTTGCCCAGATGAGATCACTATGGTTTCCATTCTCTCTGCTTGTACTGATTTGGGTGCCCTTGAACTTGGGAAATGGATTGAAGCTTATATAGAGAGACAAGGAATTCATAAACCAGTAGAGGTTAGTAATGCACTTATTGACATGTTTGCAAAGTGTGGTGATATTAACAAAGCATTGAAGTTGTTTAGAGCTTTGAATGAGAAAACAATAGTTTCCTGGACTTCTGTTATTGTTGGCATGGCAATGCATGGCCGTGGTCAAGAGGCCATTTGTTTGTTTGAGGAGATGATAGTTTCTGGTGTTGCTCCAGACGATGTCTCCTTTATCGGCTTGCTTTCTGCTTGTAGCCATTCGGGACTAGTAGAAAGAGGTAGAGAATATTTCAGTTCTATGATGAAGAAATACAAGCTTGCTCCTAAGATAGAACACTACGGATGCATGGTGGATATGTATTGCAGGACTGGACTAGTGAAGGAGGCTCTCCAGTTCGTACATAACATGCCGGTCGAGCCAAATCCCGTAATCTTACGAACACTAGTCAGTGCCTGCCGTGGTCATGGTGAATTCAAGCTTGGAGAAAAAATCACCAAACTGCTAATGAGACATGAGCCTTTGCATGAATCAAACTATGTCTTGCTCTCTAACATTTATGCAAAAATGCTTAGTTGGGAGAAGAAGACCAAAATTAGAGAGGTGATGGAAGTGAAAGGCATGAAAAAGATTCCAGGGAGCACCATGATTGAGATTGATAATGAAATCTATGAATTTGTTGCTGGAGATAAGTCTCATAAACAGTATAAAGAAATCTATGAAATGGTGGATGAGATGGGGAGAGAAATGAAGAAATCTGGATATCGTCCTTCGACATCGGAGGTTTTACTCGATATCAACGAAGAGGACAAAGAAGATACTTTGAATAGGCATAGTGAAAAACTAGCTATTGCATTTGGTCTTCTTAGTACTCCACCAGGAACTCCGATTCGAATCGTAAAGAATTTGCGAGTTTGCAGCGATTGCCACTCCGCGTCAAAGTACATCTCTAACATTTATAATCGTGAAATCATAATGAGAGACCGCAACCGGTTTCACCACTTCAAGTCTGGGCTGTGCTCATGTGGAGATTTCTGGTGAAGTTATAATAGCACCAAATGAGTACGAAACAGGCAATTGGTAGTGGTTCAGATTCATCAATGCTCTGCATCCATTATGCAGCTGAGGGCATTACTTATTAAAACTTGGAAGAATATTTCAAAGATGCAATTGGTAATGTTTCGTATTCCCTACGCTTGAGACAAAGCTCAGCCCCATTTGGCGCCAATATGCTTGAGAACTTCAAATTCAACCGAAAAAGAAAATCAGCTGCTTTTGCTTGAAAGTGTTCACTTATCTATGCTGCAAGTAAAATGGGAAGCTAGCTTCCTTGGCGAACAGCTTGATCTTGAAGGCGATCGAACTAGCAACGTGGCATGTGAAGTTTTACTCTTATTCTCAATCATTAAGGAACTCCCAACAAGCATAGGATGCAAAGAGGGGTGGGCTTAGCCCGGTGATGTCATGACTTTTAAGTTGTGTGATGGAGATTGAATCATCGACTTTTGAGATGGTAGTTTAGTTTTTGTCTATTAAGTTTTGTTTGAATTGACTAAATAATGTTATGGCGATATGATTTTTAAACATGTTAGTCTTGGGAAATTGATTTACTATAAAGTCTGGAGTTAAAAGGGAATGGATCTTCCTTTTTTACACTATGTTTATAGAAAATTTATAAAGGTAGCTTTTACTTAAGTACTTAATTAGCCAATCATCCCCTAAATTATTAAA 2672 41.13 MQSQFTKTKLLRAINNVVASTTNPRAAEQNCLALLQACNALPKLTQIHTHILKLGLHNNPLVLTKFASISSLIHATDYAASFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALSLYSIMLHDGILPNKFTYPFVLKACAGLEVLNLGQSVHGSVVKFGFDRDIHVQNTMIHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSILSACTDLGALELGKWIEAYIERQGIHKPVEVSNALIDMFAKCGDINKALKLFRALNEKTIVSWTSVIVGMAMHGRGQEAICLFEEMIVSGVAPDDVSFIGLLSACSHSGLVERGREYFSSMMKKYKLAPKIEHYGCMVDMYCRTGLVKEALQFVHNMPVEPNPVILRTLVSACRGHGEFKLGEKITKLLMRHEPLHESNYVLLSNIYAKMLSWEKKTKIREVMEVKGMKKIPGSTMIEIDNEIYEFVAGDKSHKQYKEIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDTLNRHSEKLAIAFGLLSTPPGTPIRIVKNLRVCSDCHSASKYISNIYNREIIMRDRNRFHHFKSGLCSCGDFW 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24238368 24241163 - XM_039028273.1 Bhi04g00972 32581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00972 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 94 129 IPR002885 -
Bhi04g00972 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 368 IPR002885 -
Bhi04g00972 605 Pfam PPR repeat 272 295 IPR002885 -
Bhi04g00972 605 Pfam PPR repeat 372 396 IPR002885 -
Bhi04g00972 605 TIGRFAM PPR: pentatricopeptide repeat domain 97 130 IPR002885 -
Bhi04g00972 605 TIGRFAM PPR: pentatricopeptide repeat domain 199 233 IPR002885 -
Bhi04g00972 605 TIGRFAM PPR: pentatricopeptide repeat domain 373 396 IPR002885 -
Bhi04g00972 605 TIGRFAM PPR: pentatricopeptide repeat domain 300 333 IPR002885 -
Bhi04g00972 605 Pfam E motif 415 477 IPR046848 -
Bhi04g00972 605 Gene3D Tetratricopeptide repeat domain 253 483 IPR011990 GO:0005515
Bhi04g00972 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Bhi04g00972 605 Pfam E+ motif 482 509 IPR046849 -
Bhi04g00972 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Bhi04g00972 605 Pfam DYW family of nucleic acid deaminases 513 605 IPR032867 GO:0008270
Bhi04g00972 605 Pfam PPR repeat family 197 243 IPR002885 -
Bhi04g00972 605 Pfam PPR repeat family 94 142 IPR002885 -
Bhi04g00972 605 Pfam PPR repeat family 298 345 IPR002885 -
Bhi04g00972 605 Gene3D Tetratricopeptide repeat domain 12 146 IPR011990 GO:0005515
Bhi04g00972 605 Gene3D Tetratricopeptide repeat domain 147 251 IPR011990 GO:0005515
Bhi04g00972 605 PANTHER - 29 591 - -
Bhi04g00972 605 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 29 591 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00972 - - - csv:101208624 1144.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00972 Bhi-Chr4:24238368 Bhi07g01623 Bhi-Chr7:45817376 0 dispersed
Bhi05g00159 Bhi-Chr5:3261233 Bhi04g00972 Bhi-Chr4:24238368 9.27E-24 dispersed
Bhi05g00432 Bhi-Chr5:9116829 Bhi04g00972 Bhi-Chr4:24238368 1.73E-166 dispersed
Bhi07g01635 Bhi-Chr7:46178903 Bhi04g00972 Bhi-Chr4:24238368 8.93E-161 dispersed
Bhi04g00972 Bhi-Chr4:24238368 Bhi07g01562 Bhi-Chr7:44720748 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g465 . . . . . . . . . Cmo12g00282 . . . Car12g00314 . . . Bhi04g00972 . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01266 Bpe14g00577 . . . . . . . Cma12g00333 . . . . . . . . . . . . . . . . . . Lsi08g01196 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00972 Bhi_Chr04 FPKM 70.489883 71.72187 6.42093 5.220552 2.365911 2.502769 1.805012 0.456953 0.393799 0.438828