Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01007 ATGAGCAATATTATTGTCCCACTGCCTTCGAACCTGGTGACCGACACAGCGGATCCAGATTGGATGAGCAAAGGCGACAACGCATGGCAGATGACGGCGGCGACACTGGTGGGACTGCAAAGCGTGCCGGGTCTGATCATTCTGTACGGGGGAGCCGTGAAGAAGAAATGGGCTATAAACTCAGCGTTCATGGCTCTATACGCGTTCGCTTGCGTGTTGGTTTGCTGGGTGGGGTGGGGTTACCGGCTGTCGTTCGGTGACAAACTGACGCCGTTTTGGGGGAAACTGAATGTGGCTTTGGAACAGCAGTATCTTCTTGAACAAGGGTTCGCCGGGAAGTTTCCTGCGGCCACAATGGTGTTTTTCCAGTTCGTATTTGCGGCGATCACGTTGGTTTTGATTGCGGGAGCTTTGCTTGGGCGTATGAATTTTTACGCTTGGATGCTGTTTGTGCCGCTTTGGTTAACGTTTTCTTATACGTTTGTGGCGTTCAGTATTTGGAGTCCTCAAGGGTTTTTTAATAAAATGGGACTCATTGATTACTCTGGTGGCTATGTCATTCATTTGTCCTCTGGTGTTGCGGGCTTCACCGCTGCATATTGGGTTGGGCCACGGCTATCGAAGGACAGAGAAAGCTTTCCCCCGAACAACATTCTTCTGATGCTGGCCGGAGCAGGGCTGCTATGGATGGGTTGGACGGGGTTCAACGGCGGTGACCCGTACGCCGCCAACATCGACGCCTCACTGGCGGTTCTGAACACCCACGTTTGCACCGCCACCAGCCTCCTTACTTGGCTCATCTTCGACATCATCTTCTTCAGAAAGCCCTCCGTCATCGGCGCCGTCCAAGGCATGATTACCGGCCTCGTTTGCATCACCCCCGCCGCAGGAGTTGTTCAAGGATGGGCCGCGATTATAATGGGAGTGCTATCAGGTTCAATCCCATGGTTCACAATGATGGTAGTTCATAAAAAATCCGCCATTCTCCAAAAGGTAGACGACACAATGGCCGTTCTTCACACCCATGCCATCGCCGGCAGCCTCGGCGGCATTTTAAGCGGCCTCTTCGCCGAGCCACGCCTCAACTTAATCTTCTACGGCAACTACAATAAATACATCGGCCTTTTCTACGGCTTCAACACCAAACAGGTCAAACTCGGCTTCCGACAACTCGGTGTCCAACTCCTCGGAATCATCTTCGTCACCCTCATCAACATCATCGTCACGAGCCTTATTTGTGTCCTCCTCCAGTACATCGTCCCACTCCGAATGTCCGAGGAGGACATGGCTATCGGCGACGAGGCTGCCCACGGCGAAGAGGCCTACGCCATTTGGGGTCAGGGCGAGAAGATGGATTCTTCTAAGTATGATATGGAAGTTCCGGTTGCAACCAAACATAGGCAGGCTGGCCAAGTCGAAATGGCCTGA 1428 52.8 MSNIIVPLPSNLVTDTADPDWMSKGDNAWQMTAATLVGLQSVPGLIILYGGAVKKKWAINSAFMALYAFACVLVCWVGWGYRLSFGDKLTPFWGKLNVALEQQYLLEQGFAGKFPAATMVFFQFVFAAITLVLIAGALLGRMNFYAWMLFVPLWLTFSYTFVAFSIWSPQGFFNKMGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLSKDRESFPPNNILLMLAGAGLLWMGWTGFNGGDPYAANIDASLAVLNTHVCTATSLLTWLIFDIIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAAIIMGVLSGSIPWFTMMVVHKKSAILQKVDDTMAVLHTHAIAGSLGGILSGLFAEPRLNLIFYGNYNKYIGLFYGFNTKQVKLGFRQLGVQLLGIIFVTLINIIVTSLICVLLQYIVPLRMSEEDMAIGDEAAHGEEAYAIWGQGEKMDSSKYDMEVPVATKHRQAGQVEMA 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25360377 25365471 - XM_039029918.1 Bhi04g01007 32616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01007 475 SUPERFAMILY Ammonium transporter 21 424 - -
Bhi04g01007 475 PANTHER AMMONIUM TRANSPORTER 6 474 - -
Bhi04g01007 475 PANTHER AMMONIUM TRANSPORTER MEP2 6 474 IPR001905 GO:0008519|GO:0016020|GO:0072488
Bhi04g01007 475 Pfam Ammonium Transporter Family 28 442 IPR024041 GO:0008519|GO:0016020|GO:0072488
Bhi04g01007 475 Gene3D Ammonium transporter AmtB like domains 10 461 IPR029020 -
Bhi04g01007 475 PRINTS Rhesus blood group protein signature 123 139 IPR002229 GO:0005887
Bhi04g01007 475 PRINTS Rhesus blood group protein signature 219 237 IPR002229 GO:0005887
Bhi04g01007 475 PRINTS Rhesus blood group protein signature 250 272 IPR002229 GO:0005887
Bhi04g01007 475 TIGRFAM amt: ammonium transporter 26 442 IPR001905 GO:0008519|GO:0016020|GO:0072488
Bhi04g01007 475 ProSitePatterns Ammonium transporters signature. 180 205 IPR018047 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00803 Bhi-Chr3:14796524 Bhi04g01007 Bhi-Chr4:25360377 0 dispersed
Bhi04g01007 Bhi-Chr4:25360377 Bhi11g01784 Bhi-Chr11:50378055 4.15E-178 dispersed
Bhi04g01007 Bhi-Chr4:25360377 Bhi12g01550 Bhi-Chr12:50387940 8.64E-27 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01007 K03320 - csv:101210590 906.36