Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01021 TATAAAAGTAATTTCGATTGAAAAACAACAGCTAGTCTCATTTCGTCCAAAGCCCACGGATTATCAGCAAAATAAATTTTCAGCTCTCTCGAAATAAAAGCAAAAAGCTTCGGAAACAAAAATACGTTTTTGGATTGCAGGTCTTGGCGAAAAGGGTTTTGTTTTTTCGCTTCTGGGTTTGGTGGGTTTGGCCAGGAAGAGCTCAATAAGAGCTGGACCAGCTTGTTTTTTAAAAAACTAACAGTTTATTTTGATTTTATCCACTCCTCTGCTAGTGTTTGGATTCGAAAAAGATGTCTCAGACCAACTGGGAAGCTGATAAAATGTTAGATGTGTATATTCACGATTATTTGGTAAAAAGAGATTTGAAGGCTACTGCTCAGGCTTTTCAAGCAGAGGGAAAAGTGTCTTCAGATCCTGTGGCTATTGATGCGCCTGGAGGCTTTCTGTTTGAATGGTGGTCGGTATTCTGGGATATATTCATTGCTAGGACTAATGAGAAGCACTCTGATGTTGCTGCATCTTATATTGAGACACAATTAATAAAAGCAAGAGAGCAACAGCAACATCAGCAACATCAACAGCAGCAGCAGCAGCAGCAAACACAGCCACAGCAACAGCAACCACAACACATGCAGATGCTTCTGATGCAGAGACATGCCCAACAGCAGCAGCAGCAACAACAACAGCAACAGCATCAACAGCAACAGCAGCCACAGCAGCAACAACAACAAACTCAGCAACAGCAACAACAGCGAAGAGATGGAGCCCAACTCTTAAATGGACCTTCAAATGGTTTTGCTGGAAATGATCCTCTTATGCGCCAGAATCCCGGGTCTGTAAATGCATTGGCTACAAAAATGTACGAGGACAGATTAAAACTGCCCCTTCAGAGGGATTCTCTAGATGATGCGTCTATGAAACAAAGATTTGGGGAAAATGTCGGGCAGCTGTTGGACCCTAATCATGCTTCAATTCTGAAGTCAGCTGCAGCAACCAGCCAGTCCTCAGGGCAAGTGTTACATGTTACAGCTGGGGGAATGTCTCCTCAAGTTCAATCTAGGAACCAGCAATTGCCAGGTTCCACACCGGATATAAAGAGTGAGATCAACCCAGTTTTGAATCCTAGAGCTGCAGGTCCTGAGGGATCACTGATGGGCATTCCTGGATCGAATCATGGTGGCAATAATTTGACCTTAAAGGGATGGCCCCTCACTGGGTTAGAGCAGCTACGCTCTGGGATCCTTCAGCAACAAAAACCTTTCATACAGGCTCCTCAATCCTTTCCTCCGCTTCAGATGTTGACACAACAACACCAACAACAACTTATGCTCGCACAACAGAATTTAACATCACCTTCAGTTAATGATGATGGTAGAAGATTGAGAATGCTTTTGAATAGTCGAATGGCAAAAGATGGACTTTCAAATTCTGTTGGTGATGTTGTTCCAAATGTTGGATCTCCTCTCCAAGCTGGTAGTCCTCTCTTGCCTCGTGGAGACAACACAGACATGATCATTAAGATAAAAATGGCTCAATTGCAGCATCAACAACAGCAGCAACAGAATAGTAGCCAGCAACAGCAGCAGCAGCAACTTCAGCAGCATGCTCTTTCAAATCAACAATCACAAAGCTCAAACCACAACATGCACCAGCAAGAAAATATTGGGGGCGCTGGCAGTGTCACCATGGATGGTAGCATGTCAAACTCGTTTCGTGGAAATGATCAGGTTTCAAAAAATCAGACTGGGAGAAAGAGGAAGCAGCCAGTGTCATCTTCGGGTCCAGCAAATAGCTCAGGAACAGCAAATACTGCAGGCCCATCCCCAAGTTCTGCTCCTTCAACTCCCTCAACTCACACACCTGGAGATGCAATCTCAATGCCTGCTTTGCCTCACAGTGGTAGTTCATCTAAGCCTTTGATGATGTTCAGCAGTGACGGTACTGGCACTTTTACGTCCCCCTCAAATCAGTTGTGGGATGATAAAGAACTTGAATTGCAGGCTGATATGGATCGCTTCGTGGAAGATGGGTCTCTTGATGACAATGTCGAGTCTTTTTTATCCCATGATGATGCGGACCCTAGAGATCCTGTAGGGCGTTGTATGGATGGCAGCAAAGGATTCACATTTACGGAGGTGAATTGTGTTAGAGCAAGCTCAAGCAAAGTTTCCTCTTGCCACTTTTCATCTGATGGAAAACTGCTTGTTAGTGGTGGCCATGATAAGAAGGCTGTATTATGGTACACGGAGAATTTAAAGCCGAAAACTTCACTTGAAGAACATGCTTCCATAGTCACTGATGTTCGTTTTAGTCCTAGCATGCCCCGCCTTGCAACTTCTTCATTCGATCGAACAGTCAGGGTTTGGGATGCTGACAACCATTGTTATTCTCTACGTACTTTTACGGGACATTCTGCTTCTGTTATGTCTTTGGACTTCCATCCAAAGAAGGATGACTTTATTTGCTCCTGTGATGGTGATGGTGAGATTCGATACTGGAATATTACTAATGGCAGCTGTGCAGCAGTATTCAAGGGTGGTACAGGCCAGCTGAGATTTCAACCTCGTCTTGGGAGATACTTTGCTGCTGCTGTAGATAACATCGTATCCATTTTTGATGTTGAGACACAAGCACGTCTGCATTCGTTACAGGGACACACCAAAACGGTTCATTCACTTTGTTGGGATCCTTCTGGAGAGTTCCTGGCATCCGTTAGCGAGGATTCTGTTCGAGTGTGGACACTTGCTTCGGGGAATGAGGGTGAATCTATTCACGAGTTGAGCTGTAATGGCAATAAATTTCACTCTTGCGTTTTTCATCCCACCTACTCTACTTTGCTGGTCATTGGATGTTACCAGTCGTTGGAGCTTTGGAACACAACAGAGAACAAGACGATGACTCTATCAGCTCATGAAGGTTTAATATCTTCCTTAGCAGTGTCCACAACATCGGGTCTGGTTGCCTCGGCCAGCCATGACAAGTTCATCAAACTATGGAAGTAA 3005 44.39 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSDVAASYIETQLIKAREQQQHQQHQQQQQQQQTQPQQQQPQHMQMLLMQRHAQQQQQQQQQQQHQQQQQPQQQQQQTQQQQQQRRDGAQLLNGPSNGFAGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDASMKQRFGENVGQLLDPNHASILKSAAATSQSSGQVLHVTAGGMSPQVQSRNQQLPGSTPDIKSEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLKGWPLTGLEQLRSGILQQQKPFIQAPQSFPPLQMLTQQHQQQLMLAQQNLTSPSVNDDGRRLRMLLNSRMAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMIIKIKMAQLQHQQQQQQNSSQQQQQQQLQQHALSNQQSQSSNHNMHQQENIGGAGSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGSSSKPLMMFSSDGTGTFTSPSNQLWDDKELELQADMDRFVEDGSLDDNVESFLSHDDADPRDPVGRCMDGSKGFTFTEVNCVRASSSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKPKTSLEEHASIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNIVSIFDVETQARLHSLQGHTKTVHSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHELSCNGNKFHSCVFHPTYSTLLVIGCYQSLELWNTTENKTMTLSAHEGLISSLAVSTTSGLVASASHDKFIKLWK 903
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25701157 25709517 + XM_039028895.1 Bhi04g01021 32630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01021 903 Coils Coil 85 105 - -
Bhi04g01021 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 786 826 IPR001680 GO:0005515
Bhi04g01021 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 871 903 IPR001680 GO:0005515
Bhi04g01021 903 MobiDBLite consensus disorder prediction 418 525 - -
Bhi04g01021 903 SUPERFAMILY WD40 repeat-like 613 903 IPR036322 GO:0005515
Bhi04g01021 903 ProSitePatterns Trp-Asp (WD) repeats signature. 680 694 IPR019775 -
Bhi04g01021 903 CDD WD40 615 903 - -
Bhi04g01021 903 MobiDBLite consensus disorder prediction 418 546 - -
Bhi04g01021 903 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 871 903 - -
Bhi04g01021 903 Pfam WD domain, G-beta repeat 783 816 IPR001680 GO:0005515
Bhi04g01021 903 Pfam WD domain, G-beta repeat 701 737 IPR001680 GO:0005515
Bhi04g01021 903 Pfam WD domain, G-beta repeat 866 903 IPR001680 GO:0005515
Bhi04g01021 903 Pfam WD domain, G-beta repeat 622 650 IPR001680 GO:0005515
Bhi04g01021 903 Pfam WD domain, G-beta repeat 657 693 IPR001680 GO:0005515
Bhi04g01021 903 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 704 742 - -
Bhi04g01021 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 619 660 IPR001680 GO:0005515
Bhi04g01021 903 SMART Lish 8 40 IPR006594 GO:0005515
Bhi04g01021 903 Coils Coil 411 438 - -
Bhi04g01021 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 704 746 IPR001680 GO:0005515
Bhi04g01021 903 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 903 IPR044716 GO:0003714
Bhi04g01021 903 MobiDBLite consensus disorder prediction 89 167 - -
Bhi04g01021 903 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 619 650 - -
Bhi04g01021 903 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 903 - -
Bhi04g01021 903 Gene3D - 754 903 IPR015943 GO:0005515
Bhi04g01021 903 SMART WD40_4 612 651 IPR001680 GO:0005515
Bhi04g01021 903 SMART WD40_4 654 693 IPR001680 GO:0005515
Bhi04g01021 903 SMART WD40_4 697 737 IPR001680 GO:0005515
Bhi04g01021 903 SMART WD40_4 864 903 IPR001680 GO:0005515
Bhi04g01021 903 SMART WD40_4 823 862 IPR001680 GO:0005515
Bhi04g01021 903 SMART WD40_4 779 817 IPR001680 GO:0005515
Bhi04g01021 903 SMART WD40_4 740 776 IPR001680 GO:0005515
Bhi04g01021 903 Pfam LisH 10 36 IPR006594 GO:0005515
Bhi04g01021 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 661 696 IPR001680 GO:0005515
Bhi04g01021 903 MobiDBLite consensus disorder prediction 89 181 - -
Bhi04g01021 903 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 661 696 - -
Bhi04g01021 903 Gene3D - 603 753 IPR015943 GO:0005515
Bhi04g01021 903 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01021 - - - csv:101221759 1348.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g01088 Bhi-Chr2:24605176 Bhi04g01021 Bhi-Chr4:25701157 7.48E-09 dispersed
Bhi02g01089 Bhi-Chr2:24606500 Bhi04g01021 Bhi-Chr4:25701157 2.02E-17 dispersed
Bhi04g01021 Bhi-Chr4:25701157 Bhi04g01023 Bhi-Chr4:25701643 0 dispersed
Bhi04g01021 Bhi-Chr4:25701157 Bhi04g01022 Bhi-Chr4:25701359 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g428 . . . . . . . . . . . . . . . . . Bhi04g01021 Tan02g2683 . . . . . . . . . . . . . . . . . . . . . . Bda01g00984 . Bpe14g00568 . . . . . . . . . Car05g00599 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003018 4 4 2 1 1 1 2 1 1 1 1 1 1 1 1 3 1 5 3 1 1 1 1 1 1 1 1 4 3 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
928 PF00400 WD40 0.0022 CL0186 Bhi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g01021 Bhi_Chr04 FPKM 16.804964 23.235968 39.746086 41.431198 7.930141 9.159021 6.933275 87.789528 93.60939 91.861855