Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01022 TAATAATAATACGGCCTTACATTCTCTATACTTTCATTGCTGGAATCAGAGGCTCTGCTTCTATTCTCTTGCGTAGATTCTCCCTTCTGCACTTCTTACTAATTTCCTTCCTCTTTCTGGATTCTTCTTAGGTCTTGGCGAAAAGGGTTTTGTTTTTTCGCTTCTGGGTTTGGTGGGTTTGGCCAGGAAGAGCTCAATAAGAGCTGGACCAGCTTGTTTTTTAAAAAACTAACAGTTTATTTTGATTTTATCCACTCCTCTGCTAGTGTTTGGATTCGAAAAAGATGTCTCAGACCAACTGGGAAGCTGATAAAATGTTAGATGTGTATATTCACGATTATTTGGTAAAAAGAGATTTGAAGGCTACTGCTCAGGCTTTTCAAGCAGAGGGAAAAGTGTCTTCAGATCCTGTGGCTATTGATGCGCCTGGAGGCTTTCTGTTTGAATGGTGGTCGGTATTCTGGGATATATTCATTGCTAGGACTAATGAGAAGCACTCTGATGTTGCTGCATCTTATATTGAGACACAATTAATAAAAGCAAGAGAGCAACAGCAACATCAGCAACATCAACAGCAGCAGCAGCAGCAGCAAACACAGCCACAGCAACAGCAACCACAACACATGCAGATGCTTCTGATGCAGAGACATGCCCAACAGCAGCAGCAGCAACAACAACAGCAACAGCATCAACAGCAACAGCAGCCACAGCAGCAACAACAACAAACTCAGCAACAGCAACAACAGCGAAGAGATGGAGCCCAACTCTTAAATGGACCTTCAAATGGTTTTGCTGGAAATGATCCTCTTATGCGCCAGAATCCCGGGTCTGTAAATGCATTGGCTACAAAAATGTACGAGGACAGATTAAAACTGCCCCTTCAGAGGGATTCTCTAGATGATGCGTCTATGAAACAAAGATTTGGGGAAAATGTCGGGCAGCTGTTGGACCCTAATCATGCTTCAATTCTGAAGTCAGCTGCAGCAACCAGCCAGTCCTCAGGGCAAGTGTTACATGTTACAGCTGGGGGAATGTCTCCTCAAGTTCAATCTAGGAACCAGCAATTGCCAGGTTCCACACCGGATATAAAGAGTGAGATCAACCCAGTTTTGAATCCTAGAGCTGCAGGTCCTGAGGGATCACTGATGGGCATTCCTGGATCGAATCATGGTGGCAATAATTTGACCTTAAAGGGATGGCCCCTCACTGGGTTAGAGCAGCTACGCTCTGGGATCCTTCAGCAACAAAAACCTTTCATACAGGCTCCTCAATCCTTTCCTCCGCTTCAGATGTTGACACAACAACACCAACAACAACTTATGCTCGCACAACAGAATTTAACATCACCTTCAGTTAATGATGATGGTAGAAGATTGAGAATGCTTTTGAATAGTCGAATGGCAAAAGATGGACTTTCAAATTCTGTTGGTGATGTTGTTCCAAATGTTGGATCTCCTCTCCAAGCTGGTAGTCCTCTCTTGCCTCGTGGAGACAACACAGACATGATCATTAAGCATCAACAACAGCAGCAACAGAATAGTAGCCAGCAACAGCAGCAGCAGCAACTTCAGCAGCATGCTCTTTCAAATCAACAATCACAAAGCTCAAACCACAACATGCACCAGCAAGAAAATATTGGGGGCGCTGGCAGTGTCACCATGGATGGTAGCATGTCAAACTCGTTTCGTGGAAATGATCAGGTTTCAAAAAATCAGACTGGGAGAAAGAGGAAGCAGCCAGTGTCATCTTCGGGTCCAGCAAATAGCTCAGGAACAGCAAATACTGCAGGCCCATCCCCAAGTTCTGCTCCTTCAACTCCCTCAACTCACACACCTGGAGATGCAATCTCAATGCCTGCTTTGCCTCACAGTGGTAGTTCATCTAAGCCTTTGATGATGTTCAGCAGTGACGGTACTGGCACTTTTACGTCCCCCTCAAATCAGTTGTGGGATGATAAAGAACTTGAATTGCAGGCTGATATGGATCGCTTCGTGGAAGATGGGTCTCTTGATGACAATGTCGAGTCTTTTTTATCCCATGATGATGCGGACCCTAGAGATCCTGTAGGGCGTTGTATGGATGGCAGCAAAGGATTCACATTTACGGAGGTGAATTGTGTTAGAGCAAGCTCAAGCAAAGTTTCCTCTTGCCACTTTTCATCTGATGGAAAACTGCTTGTTAGTGGTGGCCATGATAAGAAGGCTGTATTATGGTACACGGAGAATTTAAAGCCGAAAACTTCACTTGAAGAACATGCTTCCATAGTCACTGATGTTCGTTTTAGTCCTAGCATGCCCCGCCTTGCAACTTCTTCATTCGATCGAACAGTCAGGGTTTGGGATGCTGACAACCATTGTTATTCTCTACGTACTTTTACGGGACATTCTGCTTCTGTTATGTCTTTGGACTTCCATCCAAAGAAGGATGACTTTATTTGCTCCTGTGATGGTGATGGTGAGATTCGATACTGGAATATTACTAATGGCAGCTGTGCAGCAGTATTCAAGGGTGGTACAGGCCAGCTGAGATTTCAACCTCGTCTTGGGAGATACTTTGCTGCTGCTGTAGATAACATCGTATCCATTTTTGATGTTGAGACACAAGCACGTCTGCATTCGTTACAGGGACACACCAAAACGGTTCATTCACTTTGTTGGGATCCTTCTGGAGAGTTCCTGGCATCCGTTAGCGAGGATTCTGTTCGAGTGTGGACACTTGCTTCGGGGAATGAGGGTGAATCTATTCACGAGTTGAGCTGTAATGGCAATAAATTTCACTCTTGCGTTTTTCATCCCACCTACTCTACTTTGCTGGTCATTGGATGTTACCAGTCGTTGGAGCTTTGGAACACAACAGAGAACAAGACGATGACTCTATCAGCTCATGAAGGTTTAATATCTTCCTTAGCAGTGTCCACAACATCGGGTCTGGTTGCCTCGGCCAGCCATGACAAGTTCATCAAACTATGGAAGTAAAATAAAAAAAGGAAAGACAAAAGAAAACCAAAAAGGGAAAATGGTAACTCACACTAGTTAAATGGAAAGCCAAGGCAGTGATCTGGTACTGGTTTGTTTTGGTCCAGCTTTGTGTACTGTTTTTAGGCCCTTTTTTTTAGGACTTCTGATTTTTTTTTCCTTCCCTTTTTGCTTTTAGAATATCAAACTTGAGCTGGATATGATATGACCTAAAATTCTGACAAAACTGTTTCTTGTAATTGGACTCCATCCTGGTAGAATGTATACTATAACTCTTCCCGTCTTCT 3262 43.84 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSDVAASYIETQLIKAREQQQHQQHQQQQQQQQTQPQQQQPQHMQMLLMQRHAQQQQQQQQQQQHQQQQQPQQQQQQTQQQQQQRRDGAQLLNGPSNGFAGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDASMKQRFGENVGQLLDPNHASILKSAAATSQSSGQVLHVTAGGMSPQVQSRNQQLPGSTPDIKSEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLKGWPLTGLEQLRSGILQQQKPFIQAPQSFPPLQMLTQQHQQQLMLAQQNLTSPSVNDDGRRLRMLLNSRMAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMIIKHQQQQQQNSSQQQQQQQLQQHALSNQQSQSSNHNMHQQENIGGAGSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGSSSKPLMMFSSDGTGTFTSPSNQLWDDKELELQADMDRFVEDGSLDDNVESFLSHDDADPRDPVGRCMDGSKGFTFTEVNCVRASSSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKPKTSLEEHASIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNIVSIFDVETQARLHSLQGHTKTVHSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHELSCNGNKFHSCVFHPTYSTLLVIGCYQSLELWNTTENKTMTLSAHEGLISSLAVSTTSGLVASASHDKFIKLWK 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25701359 25709804 + XM_039028897.1 Bhi04g01022 32631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01022 896 Coils Coil 85 105 - -
Bhi04g01022 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 864 896 IPR001680 GO:0005515
Bhi04g01022 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 779 819 IPR001680 GO:0005515
Bhi04g01022 896 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 896 - -
Bhi04g01022 896 ProSitePatterns Trp-Asp (WD) repeats signature. 673 687 IPR019775 -
Bhi04g01022 896 Pfam LisH 10 36 IPR006594 GO:0005515
Bhi04g01022 896 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 896 IPR044716 GO:0003714
Bhi04g01022 896 CDD WD40 608 896 - -
Bhi04g01022 896 SUPERFAMILY WD40 repeat-like 606 896 IPR036322 GO:0005515
Bhi04g01022 896 SMART Lish 8 40 IPR006594 GO:0005515
Bhi04g01022 896 MobiDBLite consensus disorder prediction 89 167 - -
Bhi04g01022 896 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 654 689 - -
Bhi04g01022 896 Coils Coil 411 431 - -
Bhi04g01022 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 654 689 IPR001680 GO:0005515
Bhi04g01022 896 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 612 643 - -
Bhi04g01022 896 MobiDBLite consensus disorder prediction 407 518 - -
Bhi04g01022 896 MobiDBLite consensus disorder prediction 376 539 - -
Bhi04g01022 896 Pfam WD domain, G-beta repeat 650 686 IPR001680 GO:0005515
Bhi04g01022 896 Pfam WD domain, G-beta repeat 694 730 IPR001680 GO:0005515
Bhi04g01022 896 Pfam WD domain, G-beta repeat 859 896 IPR001680 GO:0005515
Bhi04g01022 896 Pfam WD domain, G-beta repeat 615 643 IPR001680 GO:0005515
Bhi04g01022 896 Pfam WD domain, G-beta repeat 776 809 IPR001680 GO:0005515
Bhi04g01022 896 Gene3D - 598 747 IPR015943 GO:0005515
Bhi04g01022 896 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 697 735 - -
Bhi04g01022 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 697 739 IPR001680 GO:0005515
Bhi04g01022 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 612 653 IPR001680 GO:0005515
Bhi04g01022 896 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 864 896 - -
Bhi04g01022 896 SMART WD40_4 816 855 IPR001680 GO:0005515
Bhi04g01022 896 SMART WD40_4 647 686 IPR001680 GO:0005515
Bhi04g01022 896 SMART WD40_4 772 810 IPR001680 GO:0005515
Bhi04g01022 896 SMART WD40_4 605 644 IPR001680 GO:0005515
Bhi04g01022 896 SMART WD40_4 857 896 IPR001680 GO:0005515
Bhi04g01022 896 SMART WD40_4 733 769 IPR001680 GO:0005515
Bhi04g01022 896 SMART WD40_4 690 730 IPR001680 GO:0005515
Bhi04g01022 896 MobiDBLite consensus disorder prediction 89 181 - -
Bhi04g01022 896 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Bhi04g01022 896 Gene3D - 748 896 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01022 - - - csv:101221759 1337.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00245 Bhi-Chr1:4602758 Bhi04g01022 Bhi-Chr4:25701359 0 dispersed
Bhi04g01022 Bhi-Chr4:25701359 Bhi04g01024 Bhi-Chr4:25701643 0 dispersed
Bhi04g01021 Bhi-Chr4:25701157 Bhi04g01022 Bhi-Chr4:25701359 0 tandem
Bhi04g01022 Bhi-Chr4:25701359 Bhi04g01023 Bhi-Chr4:25701643 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g426 . . . . . . . . Cmo05g00686 . . Cma05g00654 . . Sed01g1339 Cpe07g00273 . Bhi04g01022 Tan02g2682 Cmetu03g2197 . Hepe10g0285 . Lcy13g1301 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00598 Cpe11g00581 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003018 4 4 2 1 1 1 2 1 1 1 1 1 1 1 1 3 1 5 3 1 1 1 1 1 1 1 1 4 3 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
929 PF00400 WD40 0.0022 CL0186 Bhi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g01022 Bhi_Chr04 FPKM 19.37623 19.187933 19.664934 20.792372 13.721189 12.674817 14.734155 8.312867 8.453748 11.043018